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1TMG
Asym. Unit
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Asym.Unit (71 KB)
Biol.Unit 1 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX OF SUBTILISIN BPN' WITH CHYMOTRYPSIN INHIBITOR 2 M59F MUTANT
Authors
:
E. S. Radisky, G. Kwan, C. J. Karen Lu, D. E. Koshland Jr.
Date
:
10 Jun 04 (Deposition) - 09 Nov 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : E,I
Biol. Unit 1: E,I (1x)
Keywords
:
Serine Protease, Inhibitor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. S. Radisky, G. Kwan, C. J. Karen Lu, D. E. Koshland Jr.
Binding, Proteolytic, And Crystallographic Analyses Of Mutations At The Protease-Inhibitor Interface Of The Subtilisin Bpn'/Chymotrypsin Inhibitor 2 Complex(, ).
Biochemistry V. 43 13648 2004
(for further references see the
PDB file header
)
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: POLYETHYLENE GLYCOL (N=34) (15Pa)
2a: PENTAETHYLENE GLYCOL (1PEa)
2b: PENTAETHYLENE GLYCOL (1PEb)
2c: PENTAETHYLENE GLYCOL (1PEc)
2d: PENTAETHYLENE GLYCOL (1PEd)
3a: CALCIUM ION (CAa)
4a: CITRIC ACID (CITa)
4b: CITRIC ACID (CITb)
4c: CITRIC ACID (CITc)
5a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
15P
1
Ligand/Ion
POLYETHYLENE GLYCOL (N=34)
2
1PE
4
Ligand/Ion
PENTAETHYLENE GLYCOL
3
CA
1
Ligand/Ion
CALCIUM ION
4
CIT
3
Ligand/Ion
CITRIC ACID
5
NA
1
Ligand/Ion
SODIUM ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN E:2 , ASP E:41 , LEU E:75 , ASN E:77 , ILE E:79 , VAL E:81
BINDING SITE FOR RESIDUE CA E 471
02
AC2
SOFTWARE
GLY E:169 , TYR E:171 , VAL E:174 , HOH E:512 , HOH E:613
BINDING SITE FOR RESIDUE NA E 472
03
AC3
SOFTWARE
ALA E:1 , TYR E:21 , LYS E:237 , HIS E:238 , ASN E:240 , TRP E:241 , HIS E:276 , CIT E:474 , HOH E:508 , HOH E:562 , HOH E:595 , HOH E:782 , HOH E:844
BINDING SITE FOR RESIDUE CIT E 473
04
AC4
SOFTWARE
TRP E:241 , GLN E:245 , HIS E:276 , CIT E:473 , HOH E:539 , HOH E:562 , HOH E:689 , HOH E:697 , HOH E:782 , HOH E:833 , HOH E:844 , HOH E:845
BINDING SITE FOR RESIDUE CIT E 474
05
AC5
SOFTWARE
PRO E:172 , GLY E:211 , LYS E:213 , ARG E:247 , HOH E:515 , HOH E:540 , HOH E:566 , HOH E:598 , HOH E:659 , HOH E:683 , HOH E:741
BINDING SITE FOR RESIDUE CIT E 475
06
AC6
SOFTWARE
HIS E:17 , THR E:22 , ASN E:76 , HOH E:779
BINDING SITE FOR RESIDUE 1PE E 476
07
AC7
SOFTWARE
ILE E:115 , ASN E:118 , MET E:119 , SER E:145 , HOH E:637 , HOH E:847
BINDING SITE FOR RESIDUE 1PE E 477
08
AC8
SOFTWARE
SER E:37 , VAL E:44 , ALA E:45 , GLY E:47 , PHE E:58
BINDING SITE FOR RESIDUE 15P E 478
09
AC9
SOFTWARE
PRO E:129 , GLU E:156 , THR E:164 , HOH E:834 , HOH E:836 , GLN I:78
BINDING SITE FOR RESIDUE 1PE E 479
10
BC1
SOFTWARE
LYS E:43 , HOH E:485 , HOH E:647
BINDING SITE FOR RESIDUE 1PE E 480
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_SUBT_BACAM_001 (Y21F, chain E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_SUBT_BACAM_001
*
Y
128
F
SUBT_BACAM
---
---
E
Y
21
F
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: SUBTILASE_ASP (E:28-39)
2: SUBTILASE_HIS (E:64-74)
3: SUBTILASE_SER (E:219-229)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUBTILASE_ASP
PS00136
Serine proteases, subtilase family, aspartic acid active site.
SUBT_BACAM
135-146
1
E:28-39
2
SUBTILASE_HIS
PS00137
Serine proteases, subtilase family, histidine active site.
SUBT_BACAM
171-181
1
E:64-74
3
SUBTILASE_SER
PS00138
Serine proteases, subtilase family, serine active site.
SUBT_BACAM
326-336
1
E:219-229
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1tmgi_ (I:)
2a: SCOP_d1tmge_ (E:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CI-2 family of serine protease inhibitors
(52)
Superfamily
:
CI-2 family of serine protease inhibitors
(52)
Family
:
CI-2 family of serine protease inhibitors
(50)
Protein domain
:
Chymotrypsin inhibitor CI-2
(29)
Barley (Hordeum vulgare) [TaxId: 4513]
(29)
1a
d1tmgi_
I:
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Subtilisin-like
(227)
Superfamily
:
Subtilisin-like
(227)
Family
:
Subtilases
(190)
Protein domain
:
Subtilisin
(91)
Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
(54)
2a
d1tmge_
E:
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1tmgI00 (I:20-83)
2a: CATH_1tmgE00 (E:1-281)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Trypsin Inhibitor V; Chain A
(48)
Homologous Superfamily
:
Trypsin Inhibitor V, subunit A
(48)
Bacillus amyloliquefaciens. Organism_taxid: 1390.
(18)
1a
1tmgI00
I:20-83
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.200, no name defined]
(198)
Bacillus amyloliquefaciens. Organism_taxid: 1390.
(31)
2a
1tmgE00
E:1-281
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_potato_inhibit_1tmgI01 (I:21-83)
2a: PFAM_Peptidase_S8_1tmgE01 (E:27-275)
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)
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)
Clan
:
CI-2
(32)
Family
:
potato_inhibit
(32)
Hordeum vulgare (Barley)
(20)
1a
potato_inhibit-1tmgI01
I:21-83
Clan
:
no clan defined [family: Peptidase_S8]
(104)
Family
:
Peptidase_S8
(104)
Bacillus amyloliquefaciens (Bacillus velezensis)
(38)
2a
Peptidase_S8-1tmgE01
E:27-275
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Chain I
Asymmetric Unit 1
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