PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1TLL
Asym. Unit
Info
Asym.Unit (220 KB)
Biol.Unit 1 (212 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF RAT NEURONAL NITRIC-OXIDE SYNTHASE REDUCTASE MODULE AT 2.3 A RESOLUTION.
Authors
:
E. D. Garcin, C. M. Bruns, S. J. Lloyd, D. J. Hosfield, M. Tiso, R. Gachhui, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Date
:
09 Jun 04 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nitric-Oxide Synthase, Reductase Module, Fmn, Fad, Nadp+, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. D. Garcin, C. M. Bruns, S. J. Lloyd, D. J. Hosfield, M. Tiso, R. Gachhui, D. J. Stuehr, J. A. Tainer, E. D. Getzoff
Structural Basis For Isozyme-Specific Regulation Of Electron Transfer In Nitric-Oxide Synthase
J. Biol. Chem. V. 279 37918 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 8)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4a: SULFITE ION (SO3a)
4b: SULFITE ION (SO3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
FMN
2
Ligand/Ion
FLAVIN MONONUCLEOTIDE
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
SO3
2
Ligand/Ion
SULFITE ION
[
close Hetero Component info
]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:1142 , ARG A:1200
BINDING SITE FOR RESIDUE SO3 A 1500
2
AC2
SOFTWARE
LYS B:3095 , ARG B:3217
BINDING SITE FOR RESIDUE SO3 B 2500
3
AC3
SOFTWARE
THR A:761 , GLU A:762 , THR A:763 , GLY A:764 , LYS A:765 , SER A:766 , SER A:807 , THR A:808 , PHE A:809 , GLY A:810 , GLY A:812 , GLY A:885 , SER A:886 , TYR A:889 , HIS A:891 , PHE A:892 , CYS A:893 , GLU A:919 , GLN A:923 , ILE A:1394 , FAD A:1452 , HOH A:5026
BINDING SITE FOR RESIDUE FMN A 1451
4
AC4
SOFTWARE
HIS A:1032 , ARG A:1173 , TYR A:1174 , TYR A:1175 , SER A:1176 , THR A:1191 , VAL A:1192 , ALA A:1193 , TYR A:1197 , GLY A:1209 , VAL A:1210 , CYS A:1211 , SER A:1212 , THR A:1251 , ALA A:1254 , PHE A:1395 , FMN A:1451 , HOH A:5004 , HOH A:5008 , HOH A:5030 , HOH A:5038
BINDING SITE FOR RESIDUE FAD A 1452
5
AC5
SOFTWARE
ARG A:1010 , ALA A:1193 , ILE A:1194 , VAL A:1195 , SER A:1196 , PRO A:1249 , GLY A:1250 , THR A:1251 , GLY A:1282 , CYS A:1283 , ARG A:1284 , SER A:1313 , ARG A:1314 , TYR A:1322 , GLN A:1324 , MET A:1354 , THR A:1398 , LEU A:1399 , ARG A:1400 , HOH A:5000 , HOH A:5010 , HOH A:5012 , HOH A:5127
BINDING SITE FOR RESIDUE NAP A 1453
6
AC6
SOFTWARE
FAD B:2452 , THR B:2761 , GLU B:2762 , THR B:2763 , GLY B:2764 , LYS B:2765 , SER B:2766 , SER B:2807 , THR B:2808 , PHE B:2809 , GLY B:2810 , GLY B:2812 , LEU B:2884 , GLY B:2885 , SER B:2886 , TYR B:2889 , HIS B:2891 , PHE B:2892 , CYS B:2893 , GLU B:2919 , GLN B:2923 , ILE B:3394
BINDING SITE FOR RESIDUE FMN B 2451
7
AC7
SOFTWARE
FMN B:2451 , NAP B:2453 , HIS B:3032 , ARG B:3173 , TYR B:3174 , TYR B:3175 , SER B:3176 , THR B:3191 , VAL B:3192 , ALA B:3193 , TYR B:3197 , GLY B:3209 , VAL B:3210 , CYS B:3211 , SER B:3212 , ALA B:3254 , PHE B:3395 , HOH B:6003 , HOH B:6025 , HOH B:6026 , HOH B:6042 , HOH B:6043 , HOH B:6081 , HOH B:6083 , HOH B:6095
BINDING SITE FOR RESIDUE FAD B 2452
8
AC8
SOFTWARE
FAD B:2452 , ARG B:3010 , ALA B:3193 , PRO B:3249 , THR B:3251 , CYS B:3283 , ARG B:3284 , SER B:3313 , ARG B:3314 , LYS B:3320 , TYR B:3322 , GLN B:3324 , THR B:3353 , MET B:3354 , THR B:3398 , LEU B:3399 , ARG B:3400 , HOH B:6016 , HOH B:6072 , HOH B:6091 , HOH B:6095
BINDING SITE FOR RESIDUE NAP B 2453
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: FLAVODOXIN_LIKE (A:755-935,B:2755-2935)
2: FAD_FR (A:990-1237,B:2990-3237)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FLAVODOXIN_LIKE
PS50902
Flavodoxin-like domain profile.
NOS1_RAT
755-935
2
A:755-935
B:2755-2935
2
FAD_FR
PS51384
Ferredoxin reductase-type FAD binding domain profile.
NOS1_RAT
990-1237
2
A:990-1237
B:2990-3237
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1tlla1 (A:959-1232)
1b: SCOP_d1tllb1 (B:2959-3232)
2a: SCOP_d1tlla3 (A:1233-1413)
2b: SCOP_d1tllb3 (B:3233-3413)
3a: SCOP_d1tlla2 (A:750-951)
3b: SCOP_d1tllb2 (B:2752-2952)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin synthase domain-like
(130)
Family
:
NADPH-cytochrome p450 reductase FAD-binding domain-like
(16)
Protein domain
:
Neuronal nitric-oxide synthase FAD/NADP+ domain
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
1a
d1tlla1
A:959-1232
1b
d1tllb1
B:2959-3232
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Superfamily
:
Ferredoxin reductase-like, C-terminal NADP-linked domain
(120)
Family
:
NADPH-cytochrome p450 reductase-like
(8)
Protein domain
:
Neuronal nitric-oxide synthase FAD/NADP+ domain
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(2)
2a
d1tlla3
A:1233-1413
2b
d1tllb3
B:3233-3413
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Flavoproteins
(208)
Family
:
Cytochrome p450 reductase N-terminal domain-like
(7)
Protein domain
:
Nitric oxide (NO) synthase FMN domain
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
3a
d1tlla2
A:750-951
3b
d1tllb2
B:2752-2952
[
close SCOP info
]
CATH Domains
(3, 6)
Info
all CATH domains
1a: CATH_1tllA04 (A:1235-1413)
1b: CATH_1tllB04 (B:3235-3413)
2a: CATH_1tllA02 (A:960-987,A:1038-1171)
2b: CATH_1tllB02 (B:2960-2987,B:3038-3171)
3a: CATH_1tllA03 (A:988-1037,A:1172-1234)
3b: CATH_1tllB03 (B:2988-3037,B:3172-3234)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module
(85)
Norway rat (Rattus norvegicus)
(9)
1a
1tllA04
A:1235-1413
1b
1tllB04
B:3235-3413
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Homologous Superfamily
:
NADPH-cytochrome p450 Reductase; Chain A, domain 3
(8)
Norway rat (Rattus norvegicus)
(6)
2a
1tllA02
A:960-987,A:1038-1171
2b
1tllB02
B:2960-2987,B:3038-3171
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Translation factors
(223)
Norway rat (Rattus norvegicus)
(9)
3a
1tllA03
A:988-1037,A:1172-1234
3b
1tllB03
B:2988-3037,B:3172-3234
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_FAD_binding_1_1tllB01 (B:2985-3214)
1b: PFAM_FAD_binding_1_1tllB02 (B:2985-3214)
2a: PFAM_Flavodoxin_1_1tllB03 (B:2757-2930)
2b: PFAM_Flavodoxin_1_1tllB04 (B:2757-2930)
3a: PFAM_NAD_binding_1_1tllB05 (B:3246-3360)
3b: PFAM_NAD_binding_1_1tllB06 (B:3246-3360)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FAD_Lum_binding
(30)
Family
:
FAD_binding_1
(4)
Rattus norvegicus (Rat)
(3)
1a
FAD_binding_1-1tllB01
B:2985-3214
1b
FAD_binding_1-1tllB02
B:2985-3214
Clan
:
Flavoprotein
(71)
Family
:
Flavodoxin_1
(23)
Rattus norvegicus (Rat)
(3)
2a
Flavodoxin_1-1tllB03
B:2757-2930
2b
Flavodoxin_1-1tllB04
B:2757-2930
Clan
:
NAD_Ferredoxin
(30)
Family
:
NAD_binding_1
(30)
Rattus norvegicus (Rat)
(3)
3a
NAD_binding_1-1tllB05
B:3246-3360
3b
NAD_binding_1-1tllB06
B:3246-3360
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (220 KB)
Header - Asym.Unit
Biol.Unit 1 (212 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1TLL
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help