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1TLG
Biol. Unit 1
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (47 KB)
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(1)
Title
:
STRUCTURE OF A TUNICATE C-TYPE LECTIN COMPLEXED WITH D-GALACTOSE
Authors
:
S. F. Poget, G. B. Legge, M. Bycroft, R. L. Williams
Date
:
16 Oct 98 (Deposition) - 23 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Keywords
:
C-Type Lectin, Galactose-Specific, Carbohydrate Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. F. Poget, G. B. Legge, M. R. Proctor, P. J. Butler, M. Bycroft, R. L. Williams
The Structure Of A Tunicate C-Type Lectin From Polyandrocarpa Misakiensis Complexed With D -Galactose.
J. Mol. Biol. V. 290 867 1999
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: CAA (UNKNOWN)
13: CAB (UNKNOWN)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:86 , SER A:88 , ASN A:89 , TRP A:100 , ASP A:107 , ASP A:108 , CA A:201 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:314 , HOH A:361
BINDING SITE FOR RESIDUE GAL A 126
02
AC2
SOFTWARE
GLU B:86 , SER B:88 , ASN B:89 , TRP B:100 , ASP B:107 , ASP B:108 , CA B:201 , HOH B:313 , HOH B:322 , HOH B:324 , HOH B:375
BINDING SITE FOR RESIDUE GAL B 126
03
AC3
SOFTWARE
GLU A:86 , SER A:88 , ASN A:89 , ASP A:107 , ASP A:108 , GAL A:126
BINDING SITE FOR RESIDUE CA A 201
04
AC4
SOFTWARE
HOH A:370 , HOH A:371 , HOH A:372 , HOH A:373 , HOH A:374 , HOH A:375
BINDING SITE FOR RESIDUE CA A 202
05
AC5
SOFTWARE
HIS A:51 , HOH A:321 , GLU B:10 , HOH B:392
BINDING SITE FOR RESIDUE ZN A 301
06
AC6
SOFTWARE
ASP A:35 , HOH A:367
BINDING SITE FOR RESIDUE ZN A 302
07
AC7
SOFTWARE
ASP A:2 , ASP B:2 , HOH B:339
BINDING SITE FOR RESIDUE ZN A 303
08
AC8
SOFTWARE
GLU B:86 , ASN B:89 , ASP B:107 , ASP B:108 , GAL B:126
BINDING SITE FOR RESIDUE CA B 201
09
AC9
SOFTWARE
HOH B:420 , HOH B:421 , HOH B:422 , HOH B:423 , HOH B:424 , HOH B:425
BINDING SITE FOR RESIDUE CA B 202
10
BC1
SOFTWARE
HIS B:51
BINDING SITE FOR RESIDUE ZN B 301
11
BC2
SOFTWARE
HOH A:384 , ASP B:35 , HOH B:387
BINDING SITE FOR RESIDUE ZN B 302
12
CAA
UNKNOWN
GLU A:86 , ASN A:89 , ASP A:107 , ASP A:108
CARBOHYDRATE BINDING CALCIUM SITE OF CHAIN A
13
CAB
UNKNOWN
GLU B:86 , ASN B:89 , ASP B:107 , ASP B:108
CARBOHYDRATE BINDING CALCIUM SITE OF CHAIN B
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:96-119,B:96-119)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LECC_POLMI
96-119
2
A:96-119
B:96-119
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tlga_ (A:)
1b: SCOP_d1tlgb_ (B:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Lectin TC14
(2)
Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723]
(2)
1a
d1tlga_
A:
1b
d1tlgb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tlgA00 (A:2-124)
1b: CATH_1tlgB00 (B:2-124)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Polyandrocarpa misakiensis. Organism_taxid: 7723.
(2)
1a
1tlgA00
A:2-124
1b
1tlgB00
B:2-124
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lectin_C_1tlgB01 (B:10-121)
1b: PFAM_Lectin_C_1tlgB02 (B:10-121)
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Clans
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)
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)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Polyandrocarpa misakiensis (Tunicate)
(1)
1a
Lectin_C-1tlgB01
B:10-121
1b
Lectin_C-1tlgB02
B:10-121
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (51 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (47 KB)
Header - Biol.Unit 4
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