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1TLG
Asym. Unit
Info
Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (46 KB)
Biol.Unit 3 (47 KB)
Biol.Unit 4 (47 KB)
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(1)
Title
:
STRUCTURE OF A TUNICATE C-TYPE LECTIN COMPLEXED WITH D-GALACTOSE
Authors
:
S. F. Poget, G. B. Legge, M. Bycroft, R. L. Williams
Date
:
16 Oct 98 (Deposition) - 23 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A,B (1x)
Keywords
:
C-Type Lectin, Galactose-Specific, Carbohydrate Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. F. Poget, G. B. Legge, M. R. Proctor, P. J. Butler, M. Bycroft, R. L. Williams
The Structure Of A Tunicate C-Type Lectin From Polyandrocarpa Misakiensis Complexed With D -Galactose.
J. Mol. Biol. V. 290 867 1999
(for further references see the
PDB file header
)
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Hetero Components
(3, 11)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: BETA-D-GALACTOSE (GALa)
2b: BETA-D-GALACTOSE (GALb)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
GAL
2
Ligand/Ion
BETA-D-GALACTOSE
3
ZN
5
Ligand/Ion
ZINC ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: CAA (UNKNOWN)
13: CAB (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:86 , SER A:88 , ASN A:89 , TRP A:100 , ASP A:107 , ASP A:108 , CA A:201 , HOH A:310 , HOH A:311 , HOH A:312 , HOH A:314 , HOH A:361
BINDING SITE FOR RESIDUE GAL A 126
02
AC2
SOFTWARE
GLU B:86 , SER B:88 , ASN B:89 , TRP B:100 , ASP B:107 , ASP B:108 , CA B:201 , HOH B:313 , HOH B:322 , HOH B:324 , HOH B:375
BINDING SITE FOR RESIDUE GAL B 126
03
AC3
SOFTWARE
GLU A:86 , SER A:88 , ASN A:89 , ASP A:107 , ASP A:108 , GAL A:126
BINDING SITE FOR RESIDUE CA A 201
04
AC4
SOFTWARE
HOH A:370 , HOH A:371 , HOH A:372 , HOH A:373 , HOH A:374 , HOH A:375
BINDING SITE FOR RESIDUE CA A 202
05
AC5
SOFTWARE
HIS A:51 , HOH A:321 , GLU B:10 , HOH B:392
BINDING SITE FOR RESIDUE ZN A 301
06
AC6
SOFTWARE
ASP A:35 , HOH A:367
BINDING SITE FOR RESIDUE ZN A 302
07
AC7
SOFTWARE
ASP A:2 , ASP B:2 , HOH B:339
BINDING SITE FOR RESIDUE ZN A 303
08
AC8
SOFTWARE
GLU B:86 , ASN B:89 , ASP B:107 , ASP B:108 , GAL B:126
BINDING SITE FOR RESIDUE CA B 201
09
AC9
SOFTWARE
HOH B:420 , HOH B:421 , HOH B:422 , HOH B:423 , HOH B:424 , HOH B:425
BINDING SITE FOR RESIDUE CA B 202
10
BC1
SOFTWARE
HIS B:51
BINDING SITE FOR RESIDUE ZN B 301
11
BC2
SOFTWARE
HOH A:384 , ASP B:35 , HOH B:387
BINDING SITE FOR RESIDUE ZN B 302
12
CAA
UNKNOWN
GLU A:86 , ASN A:89 , ASP A:107 , ASP A:108
CARBOHYDRATE BINDING CALCIUM SITE OF CHAIN A
13
CAB
UNKNOWN
GLU B:86 , ASN B:89 , ASP B:107 , ASP B:108
CARBOHYDRATE BINDING CALCIUM SITE OF CHAIN B
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: C_TYPE_LECTIN_1 (A:96-119,B:96-119)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
LECC_POLMI
96-119
2
A:96-119
B:96-119
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tlga_ (A:)
1b: SCOP_d1tlgb_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Lectin TC14
(2)
Tunicate (Polyandrocarpa misakiensis) [TaxId: 7723]
(2)
1a
d1tlga_
A:
1b
d1tlgb_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tlgA00 (A:2-124)
1b: CATH_1tlgB00 (B:2-124)
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)
Organisms
(
)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Polyandrocarpa misakiensis. Organism_taxid: 7723.
(2)
1a
1tlgA00
A:2-124
1b
1tlgB00
B:2-124
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lectin_C_1tlgB01 (B:10-121)
1b: PFAM_Lectin_C_1tlgB02 (B:10-121)
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Clans
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(
)
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(
)
(
)
Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Polyandrocarpa misakiensis (Tunicate)
(1)
1a
Lectin_C-1tlgB01
B:10-121
1b
Lectin_C-1tlgB02
B:10-121
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (51 KB)
Header - Asym.Unit
Biol.Unit 1 (46 KB)
Header - Biol.Unit 1
Biol.Unit 2 (46 KB)
Header - Biol.Unit 2
Biol.Unit 3 (47 KB)
Header - Biol.Unit 3
Biol.Unit 4 (47 KB)
Header - Biol.Unit 4
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