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1TJC
Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUMAN TYPE I COLLAGEN PROLYL 4-HYDROXYLASE
Authors
:
M. Pekkala, R. Hieta, U. Bergmann, K. I. Kivirikko, R. K. Wierenga, J. My
Date
:
04 Jun 04 (Deposition) - 12 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Tpr, Helical Bundle, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Pekkala, R. Hieta, U. Bergmann, K. I. Kivirikko, R. K. Wierenga, J. Myllyharju
The Peptide-Substrate-Binding Domain Of Collagen Prolyl 4-Hydroxylases Is A Tetratricopeptide Repeat Domain With Functional Aromatic Residues.
J. Biol. Chem. V. 279 52255 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: TPR (A:188-221,B:188-221)
2: TPR_REGION (A:188-221,B:188-221)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
P4HA1_HUMAN
205-238
2
A:188-221
B:188-221
2
TPR_REGION
PS50293
TPR repeat region circular profile.
P4HA1_HUMAN
205-238
2
A:188-221
B:188-221
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Exons
(2, 4)
Info
All Exons
Exon 1.6 (A:143-218 | B:143-218)
Exon 1.7a (A:218-237 | B:218-237)
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7a
3: Boundary 1.7a/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000394890
1a
ENSE00001372871
chr10:
74856732-74856524
209
P4HA1_HUMAN
-
0
0
-
-
1.2b
ENST00000394890
2b
ENSE00001170044
chr10:
74834673-74834566
108
P4HA1_HUMAN
1-26
26
0
-
-
1.3
ENST00000394890
3
ENSE00001102025
chr10:
74833585-74833489
97
P4HA1_HUMAN
26-58
33
0
-
-
1.4
ENST00000394890
4
ENSE00001102018
chr10:
74831938-74831787
152
P4HA1_HUMAN
58-109
52
0
-
-
1.5
ENST00000394890
5
ENSE00000987124
chr10:
74828741-74828604
138
P4HA1_HUMAN
109-155
47
0
-
-
1.6
ENST00000394890
6
ENSE00001169998
chr10:
74813348-74813109
240
P4HA1_HUMAN
155-235
81
2
A:143-218
B:143-218
76
76
1.7a
ENST00000394890
7a
ENSE00001169991
chr10:
74811007-74810811
197
P4HA1_HUMAN
235-300
66
2
A:218-237
B:218-237
20
20
1.8
ENST00000394890
8
ENSE00001169986
chr10:
74806859-74806683
177
P4HA1_HUMAN
301-359
59
0
-
-
1.9
ENST00000394890
9
ENSE00001169981
chr10:
74804809-74804739
71
P4HA1_HUMAN
360-383
24
0
-
-
1.11b
ENST00000394890
11b
ENSE00001169972
chr10:
74790128-74790029
100
P4HA1_HUMAN
383-416
34
0
-
-
1.12a
ENST00000394890
12a
ENSE00001169965
chr10:
74776657-74776604
54
P4HA1_HUMAN
417-434
18
0
-
-
1.13
ENST00000394890
13
ENSE00001169956
chr10:
74774047-74773982
66
P4HA1_HUMAN
435-456
22
0
-
-
1.14b
ENST00000394890
14b
ENSE00001169951
chr10:
74770795-74770727
69
P4HA1_HUMAN
457-479
23
0
-
-
1.15a
ENST00000394890
15a
ENSE00001169944
chr10:
74769661-74769565
97
P4HA1_HUMAN
480-512
33
0
-
-
1.16a
ENST00000394890
16a
ENSE00001382372
chr10:
74768050-74766982
1069
P4HA1_HUMAN
512-534
23
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1tjca_ (A:)
1b: SCOP_d1tjcb_ (B:)
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Organisms
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)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
TPR-like
(83)
Family
:
Tetratricopeptide repeat (TPR)
(47)
Protein domain
:
Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1tjca_
A:
1b
d1tjcb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1tjcA00 (A:143-237)
1b: CATH_1tjcB00 (B:143-237)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Human (Homo sapiens)
(17)
1a
1tjcA00
A:143-237
1b
1tjcB00
B:143-237
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (38 KB)
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