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1THZ
Biol. Unit 1
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Asym.Unit (203 KB)
Biol.Unit 1 (198 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF AVIAN AICAR TRANSFORMYLASE IN COMPLEX WITH A NOVEL INHIBITOR IDENTIFIED BY VIRTUAL LIGAND SCREENING
Authors
:
L. Xu, C. Li, A. J. Olson, I. A. Wilson
Date
:
01 Jun 04 (Deposition) - 07 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Atic, Virtual Ligand Screening, Purine Biosynthesis, Cancer Target, Transferase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Xu, C. Li, A. J. Olson, I. A. Wilson
Crystal Structure Of Avian Aminoimidazole-4-Carboxamide Ribonucleotide Transformylase In Complex With A Novel Non-Folate Inhibitor Identified By Virtual Ligand Screening.
J. Biol. Chem. V. 279 50555 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: 2-{(E)-[5-HYDROXY-3-METHYL-1-(2-ME... (326a)
1b: 2-{(E)-[5-HYDROXY-3-METHYL-1-(2-ME... (326b)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
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No.
Name
Count
Type
Full Name
1
326
2
Ligand/Ion
2-{(E)-[5-HYDROXY-3-METHYL-1-(2-METHYL-4-SULFOPHENYL)-1H-PYRAZOL-4-YL]DIAZENYL}-4-SULFOBENZOIC ACID
2
K
-1
Ligand/Ion
POTASSIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
VAL A:426 , THR A:429 , SER A:431 , ASP A:540 , LEU A:590
BINDING SITE FOR RESIDUE K A 5001
2
AC2
SOFTWARE
VAL B:426 , THR B:429 , SER B:431 , SER B:433 , LEU B:590
BINDING SITE FOR RESIDUE K B 5002
3
AC3
SOFTWARE
SER A:451 , ARG A:452 , PHE A:542 , PRO A:544 , PHE A:545 , LYS B:267 , PHE B:316 , LYS B:484 , ALA B:486 , GLU B:487 , ASN B:490 , HOH B:5011 , HOH B:5311
BINDING SITE FOR RESIDUE 326 B 3001
4
AC4
SOFTWARE
LYS A:267 , PHE A:316 , VAL A:338 , LYS A:484 , ALA A:486 , GLU A:487 , ASN A:490 , HOH A:5190 , HOH A:5272 , SER B:451 , ARG B:452 , PRO B:544 , PHE B:545
BINDING SITE FOR RESIDUE 326 A 4001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1thza2 (A:201-593)
1b: SCOP_d1thzb2 (B:201-593)
2a: SCOP_d1thza1 (A:4-200)
2b: SCOP_d1thzb1 (B:4-200)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Cytidine deaminase-like
(78)
Superfamily
:
Cytidine deaminase-like
(76)
Family
:
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Protein domain
:
AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
1a
d1thza2
A:201-593
1b
d1thzb2
B:201-593
Fold
:
Methylglyoxal synthase-like
(31)
Superfamily
:
Methylglyoxal synthase-like
(31)
Family
:
Inosicase
(12)
Protein domain
:
IMP cyclohydrolase domain of bifunctional purine biosynthesis enzyme ATIC
(12)
Chicken (Gallus gallus) [TaxId: 9031]
(8)
2a
d1thza1
A:4-200
2b
d1thzb1
B:4-200
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CATH Domains
(3, 8)
Info
all CATH domains
1a: CATH_1thzA02 (A:375-476,A:520-585)
1b: CATH_1thzB02 (B:375-476,B:520-585)
1c: CATH_1thzA03 (A:228-374)
1d: CATH_1thzB03 (B:228-374)
2a: CATH_1thzA04 (A:4-198)
2b: CATH_1thzB04 (B:4-198)
3a: CATH_1thzA01 (A:477-519)
3b: CATH_1thzB01 (B:477-519)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Cytidine Deaminase; domain 2
(44)
Homologous Superfamily
:
[code=3.40.140.20, no name defined]
(11)
Chicken (Gallus gallus)
(8)
1a
1thzA02
A:375-476,A:520-585
1b
1thzB02
B:375-476,B:520-585
1c
1thzA03
A:228-374
1d
1thzB03
B:228-374
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1380, no name defined]
(29)
Chicken (Gallus gallus)
(8)
2a
1thzA04
A:4-198
2b
1thzB04
B:4-198
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.440, no name defined]
(11)
Chicken (Gallus gallus)
(8)
3a
1thzA01
A:477-519
3b
1thzB01
B:477-519
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_AICARFT_IMPCHas_1thzB01 (B:136-463)
1b: PFAM_AICARFT_IMPCHas_1thzB02 (B:136-463)
2a: PFAM_MGS_1thzB03 (B:17-131)
2b: PFAM_MGS_1thzB04 (B:17-131)
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Clan
:
CDA
(39)
Family
:
AICARFT_IMPCHas
(5)
Gallus gallus (Chicken)
(3)
1a
AICARFT_IMPCHas-1thzB01
B:136-463
1b
AICARFT_IMPCHas-1thzB02
B:136-463
Clan
:
no clan defined [family: MGS]
(13)
Family
:
MGS
(13)
Gallus gallus (Chicken)
(3)
2a
MGS-1thzB03
B:17-131
2b
MGS-1thzB04
B:17-131
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Asym.Unit (203 KB)
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Header - Biol.Unit 1
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