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1TF7
Asym. Unit
Info
Asym.Unit (484 KB)
Biol.Unit 1 (473 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CIRCADIAN CLOCK PROTEIN KAIC
Authors
:
R. Pattanayek, J. Wang, T. Mori, Y. Xu, C. H. Johnson, M. Egli
Date
:
26 May 04 (Deposition) - 24 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Homohexamer, Hexamer, Circadian Clock Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Pattanayek, J. Wang, T. Mori, Y. Xu, C. H. Johnson, M. Egli
Visualizing A Circadian Clock Protein; Crystal Structure Of Kaic And Functional Insights
Mol. Cell V. 15 375 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
1e: ADENOSINE-5'-TRIPHOSPHATE (ATPe)
1f: ADENOSINE-5'-TRIPHOSPHATE (ATPf)
1g: ADENOSINE-5'-TRIPHOSPHATE (ATPg)
1h: ADENOSINE-5'-TRIPHOSPHATE (ATPh)
1i: ADENOSINE-5'-TRIPHOSPHATE (ATPi)
1j: ADENOSINE-5'-TRIPHOSPHATE (ATPj)
1k: ADENOSINE-5'-TRIPHOSPHATE (ATPk)
1l: ADENOSINE-5'-TRIPHOSPHATE (ATPl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
12
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
[
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]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:290 , GLY A:291 , THR A:292 , GLY A:293 , LYS A:294 , THR A:295 , LEU A:296 , TRP A:331 , ARG A:451 , ILE A:472 , LYS B:457 , MET B:458 , ARG B:459 , GLY B:460 , SER B:461 , TRP B:462 , HIS B:463 , LYS B:465
BINDING SITE FOR RESIDUE ATP A 1901
02
AC2
SOFTWARE
GLY A:49 , THR A:50 , GLY A:51 , LYS A:52 , THR A:53 , LEU A:54 , SER A:89 , PHE A:90 , ILE A:239 , THR A:240 , ASP A:241 , LYS B:224 , LEU B:225 , ARG B:226 , THR B:228 , SER B:229 , HIS B:230 , LYS B:232
BINDING SITE FOR RESIDUE ATP A 1903
03
AC3
SOFTWARE
THR B:290 , GLY B:291 , THR B:292 , GLY B:293 , LYS B:294 , THR B:295 , LEU B:296 , TRP B:331 , ARG B:451 , ILE B:472 , HOH B:2909 , LYS C:457 , MET C:458 , ARG C:459 , SER C:461 , TRP C:462 , HIS C:463 , LYS C:465
BINDING SITE FOR RESIDUE ATP B 2901
04
AC4
SOFTWARE
GLY B:49 , THR B:50 , GLY B:51 , LYS B:52 , THR B:53 , LEU B:54 , SER B:89 , PHE B:90 , ILE B:239 , THR B:240 , ASP B:241 , LYS C:224 , LEU C:225 , ARG C:226 , THR C:228 , SER C:229 , HIS C:230
BINDING SITE FOR RESIDUE ATP B 2903
05
AC5
SOFTWARE
THR C:290 , GLY C:291 , THR C:292 , GLY C:293 , LYS C:294 , THR C:295 , LEU C:296 , SER C:330 , TRP C:331 , ARG C:451 , ILE C:472 , LYS D:457 , MET D:458 , ARG D:459 , SER D:461 , TRP D:462 , HIS D:463 , LYS D:465 , HOH D:4909
BINDING SITE FOR RESIDUE ATP C 3901
06
AC6
SOFTWARE
GLY C:49 , THR C:50 , GLY C:51 , LYS C:52 , THR C:53 , LEU C:54 , SER C:89 , PHE C:90 , ILE C:239 , THR C:240 , ASP C:241 , LYS D:224 , ARG D:226 , THR D:228 , HIS D:230 , LYS D:232
BINDING SITE FOR RESIDUE ATP C 3903
07
AC7
SOFTWARE
THR D:290 , GLY D:291 , THR D:292 , GLY D:293 , LYS D:294 , THR D:295 , LEU D:296 , SER D:330 , TRP D:331 , ARG D:451 , ILE D:472 , ASP D:474 , LYS E:457 , MET E:458 , ARG E:459 , SER E:461 , TRP E:462 , HIS E:463 , LYS E:465
BINDING SITE FOR RESIDUE ATP D 4901
08
AC8
SOFTWARE
GLY D:49 , THR D:50 , GLY D:51 , LYS D:52 , THR D:53 , LEU D:54 , GLU D:78 , SER D:89 , PHE D:90 , ILE D:239 , THR D:240 , ASP D:241 , LYS E:224 , ARG E:226 , THR E:228 , SER E:229 , HIS E:230 , HOH E:5915
BINDING SITE FOR RESIDUE ATP D 4903
09
AC9
SOFTWARE
THR E:290 , GLY E:291 , THR E:292 , GLY E:293 , LYS E:294 , THR E:295 , LEU E:296 , TRP E:331 , ARG E:451 , ILE E:472 , ASP E:474 , LYS F:457 , MET F:458 , ARG F:459 , SER F:461 , TRP F:462 , HIS F:463 , LYS F:465
BINDING SITE FOR RESIDUE ATP E 5901
10
BC1
SOFTWARE
GLY E:49 , THR E:50 , GLY E:51 , LYS E:52 , THR E:53 , LEU E:54 , GLU E:78 , SER E:89 , PHE E:90 , ILE E:239 , ASP E:241 , LYS F:224 , ARG F:226 , THR F:228 , SER F:229 , HIS F:230 , LYS F:232
BINDING SITE FOR RESIDUE ATP E 5903
11
BC2
SOFTWARE
LYS A:457 , MET A:458 , ARG A:459 , SER A:461 , TRP A:462 , HIS A:463 , LYS A:465 , THR F:290 , GLY F:291 , THR F:292 , GLY F:293 , LYS F:294 , THR F:295 , LEU F:296 , SER F:330 , TRP F:331 , ARG F:451 , ILE F:472 , SER F:473 , ASP F:474
BINDING SITE FOR RESIDUE ATP F 6901
12
BC3
SOFTWARE
LYS A:224 , ARG A:226 , THR A:228 , HIS A:230 , GLY F:49 , THR F:50 , GLY F:51 , LYS F:52 , THR F:53 , LEU F:54 , GLU F:78 , SER F:89 , PHE F:90 , ILE F:239 , THR F:240 , ASP F:241 , HOH F:6917
BINDING SITE FOR RESIDUE ATP F 6903
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: KAIC (A:19-260,B:19-260,C:19-260,D:19-26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KAIC
PS51146
KaiC domain profile.
KAIC_SYNE7
19-260
261-493
12
A:19-260
B:19-260
C:19-260
D:19-260
E:19-260
F:19-260
A:261-493
B:261-493
C:261-493
D:261-493
E:261-493
F:261-493
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1tf7a1 (A:14-255)
1b: SCOP_d1tf7a2 (A:256-497)
1c: SCOP_d1tf7f1 (F:14-255)
1d: SCOP_d1tf7f2 (F:256-497)
1e: SCOP_d1tf7b1 (B:14-255)
1f: SCOP_d1tf7b2 (B:256-497)
1g: SCOP_d1tf7c1 (C:14-255)
1h: SCOP_d1tf7c2 (C:256-497)
1i: SCOP_d1tf7d1 (D:14-255)
1j: SCOP_d1tf7d2 (D:256-497)
1k: SCOP_d1tf7e1 (E:14-255)
1l: SCOP_d1tf7e2 (E:256-497)
View:
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)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
Circadian clock protein KaiC
(3)
Synechococcus elongatus PCC 7942 [TaxId: 1140]
(3)
1a
d1tf7a1
A:14-255
1b
d1tf7a2
A:256-497
1c
d1tf7f1
F:14-255
1d
d1tf7f2
F:256-497
1e
d1tf7b1
B:14-255
1f
d1tf7b2
B:256-497
1g
d1tf7c1
C:14-255
1h
d1tf7c2
C:256-497
1i
d1tf7d1
D:14-255
1j
d1tf7d2
D:256-497
1k
d1tf7e1
E:14-255
1l
d1tf7e2
E:256-497
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1tf7A01 (A:14-249)
1b: CATH_1tf7B01 (B:14-249)
1c: CATH_1tf7E02 (E:250-497)
1d: CATH_1tf7F02 (F:250-497)
1e: CATH_1tf7C01 (C:14-249)
1f: CATH_1tf7D01 (D:14-249)
1g: CATH_1tf7E01 (E:14-249)
1h: CATH_1tf7F01 (F:14-249)
1i: CATH_1tf7A02 (A:250-497)
1j: CATH_1tf7B02 (B:250-497)
1k: CATH_1tf7C02 (C:250-497)
1l: CATH_1tf7D02 (D:250-497)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Synechococcus sp.. Organism_taxid: 1131.
(1)
1a
1tf7A01
A:14-249
1b
1tf7B01
B:14-249
1c
1tf7E02
E:250-497
1d
1tf7F02
F:250-497
1e
1tf7C01
C:14-249
1f
1tf7D01
D:14-249
1g
1tf7E01
E:14-249
1h
1tf7F01
F:14-249
1i
1tf7A02
A:250-497
1j
1tf7B02
B:250-497
1k
1tf7C02
C:250-497
1l
1tf7D02
D:250-497
[
close CATH info
]
Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_KaiC_1tf7F01 (F:263-482)
1b: PFAM_KaiC_1tf7F02 (F:263-482)
1c: PFAM_KaiC_1tf7F03 (F:263-482)
1d: PFAM_KaiC_1tf7F04 (F:263-482)
1e: PFAM_KaiC_1tf7F05 (F:263-482)
1f: PFAM_KaiC_1tf7F06 (F:263-482)
1g: PFAM_KaiC_1tf7F07 (F:263-482)
1h: PFAM_KaiC_1tf7F08 (F:263-482)
1i: PFAM_KaiC_1tf7F09 (F:263-482)
1j: PFAM_KaiC_1tf7F10 (F:263-482)
1k: PFAM_KaiC_1tf7F11 (F:263-482)
1l: PFAM_KaiC_1tf7F12 (F:263-482)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
KaiC
(9)
Synechococcus elongatus (strain PCC 7942) (Anacystis nidulans R2)
(7)
1a
KaiC-1tf7F01
F:263-482
1b
KaiC-1tf7F02
F:263-482
1c
KaiC-1tf7F03
F:263-482
1d
KaiC-1tf7F04
F:263-482
1e
KaiC-1tf7F05
F:263-482
1f
KaiC-1tf7F06
F:263-482
1g
KaiC-1tf7F07
F:263-482
1h
KaiC-1tf7F08
F:263-482
1i
KaiC-1tf7F09
F:263-482
1j
KaiC-1tf7F10
F:263-482
1k
KaiC-1tf7F11
F:263-482
1l
KaiC-1tf7F12
F:263-482
[
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