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1TF6
Biol. Unit 1
Info
Asym.Unit (119 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION
Authors
:
R. T. Nolte, R. M. Conlin, S. C. Harrison, R. S. Brown
Date
:
02 Mar 98 (Deposition) - 10 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Complex (Transcription Regulation/Dna), Rna Polymerase Iii, Transcription Initiation, Zinc Finger Protein, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Nolte, R. M. Conlin, S. C. Harrison, R. S. Brown
Differing Roles For Zinc Fingers In Dna Recognition: Structure Of A Six-Finger Transcription Factor Iiia Complex.
Proc. Natl. Acad. Sci. Usa V. 95 2938 1998
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
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Sorry, no Info available
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AN1 (UNKNOWN)
08: AN2 (UNKNOWN)
09: AN3 (UNKNOWN)
10: AN4 (UNKNOWN)
11: AN5 (UNKNOWN)
12: AN6 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:15 , CYS A:20 , HIS A:33 , HIS A:37
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
CYS A:45 , CYS A:50 , HIS A:63 , HIS A:67
BINDING SITE FOR RESIDUE ZN A 202
03
AC3
SOFTWARE
CYS A:75 , SER A:77 , CYS A:80 , HIS A:93 , HIS A:98
BINDING SITE FOR RESIDUE ZN A 203
04
AC4
SOFTWARE
CYS A:107 , CYS A:112 , HIS A:125 , HIS A:129
BINDING SITE FOR RESIDUE ZN A 204
05
AC5
SOFTWARE
CYS A:137 , CYS A:142 , HIS A:155 , HIS A:159
BINDING SITE FOR RESIDUE ZN A 205
06
AC6
SOFTWARE
CYS A:164 , CYS A:170 , HIS A:183 , HIS A:188
BINDING SITE FOR RESIDUE ZN A 206
07
AN1
UNKNOWN
CYS A:15 , CYS A:20 , HIS A:33 , HIS A:37
ZN-BINDING SITE.
08
AN2
UNKNOWN
CYS A:45 , CYS A:50 , HIS A:63 , HIS A:67
ZN-BINDING SITE.
09
AN3
UNKNOWN
CYS A:75 , CYS A:80 , HIS A:93 , HIS A:98
ZN-BINDING SITE.
10
AN4
UNKNOWN
CYS A:107 , CYS A:112 , HIS A:125 , HIS A:129
ZN-BINDING SITE.
11
AN5
UNKNOWN
CYS A:137 , CYS A:142 , HIS A:155 , HIS A:159
ZN-BINDING SITE.
12
AN6
UNKNOWN
CYS A:164 , CYS A:170 , HIS A:183 , HIS A:188
ZN-BINDING SITE.
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_TF3A_XENLA_001 (T74K, chain A, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TF3A_XENLA_001
*
T
96
K
TF3A_XENLA
---
---
A
T
74
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 5)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (A:15-37,A:45-67,A:75-98,A:107-129,...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
TF3A_XENLA
37-59
67-89
97-120
129-151
159-181
216-236
245-268
276-298
5
A:15-37
-
A:45-67
-
A:75-98
-
A:107-129
-
A:137-159
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1tf6a1 (A:10-40)
1b: SCOP_d1tf6a2 (A:41-70)
1c: SCOP_d1tf6a3 (A:71-100)
1d: SCOP_d1tf6a4 (A:101-131)
1e: SCOP_d1tf6a5 (A:132-160)
1f: SCOP_d1tf6a6 (A:161-188)
1g: SCOP_d1tf6d1 (D:7-40)
1h: SCOP_d1tf6d2 (D:41-70)
1i: SCOP_d1tf6d3 (D:71-100)
1j: SCOP_d1tf6d4 (D:101-131)
1k: SCOP_d1tf6d5 (D:132-160)
1l: SCOP_d1tf6d6 (D:161-188)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Transcription factor IIIA, TFIIIA
(4)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(4)
1a
d1tf6a1
A:10-40
1b
d1tf6a2
A:41-70
1c
d1tf6a3
A:71-100
1d
d1tf6a4
A:101-131
1e
d1tf6a5
A:132-160
1f
d1tf6a6
A:161-188
1g
d1tf6d1
D:7-40
1h
d1tf6d2
D:41-70
1i
d1tf6d3
D:71-100
1j
d1tf6d4
D:101-131
1k
d1tf6d5
D:132-160
1l
d1tf6d6
D:161-188
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1tf6A05 (A:133-161)
1b: CATH_1tf6D05 (D:133-161)
1c: CATH_1tf6D01 (D:7-39)
1d: CATH_1tf6A01 (A:10-39)
1e: CATH_1tf6A03 (A:69-102)
1f: CATH_1tf6D03 (D:69-102)
1g: CATH_1tf6A06 (A:162-188)
1h: CATH_1tf6D06 (D:162-188)
1i: CATH_1tf6A04 (A:103-132)
1j: CATH_1tf6D04 (D:103-132)
1k: CATH_1tf6A02 (A:40-68)
1l: CATH_1tf6D02 (D:40-68)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Double Stranded RNA Binding Domain
(204)
Homologous Superfamily
:
Classic Zinc Finger
(45)
[unclassified]
(29)
1a
1tf6A05
A:133-161
1b
1tf6D05
D:133-161
1c
1tf6D01
D:7-39
1d
1tf6A01
A:10-39
1e
1tf6A03
A:69-102
1f
1tf6D03
D:69-102
1g
1tf6A06
A:162-188
1h
1tf6D06
D:162-188
1i
1tf6A04
A:103-132
1j
1tf6D04
D:103-132
1k
1tf6A02
A:40-68
1l
1tf6D02
D:40-68
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_zf_C2H2_1tf6D01 (D:135-159)
1b: PFAM_zf_C2H2_1tf6D02 (D:135-159)
1c: PFAM_zf_C2H2_1tf6D03 (D:135-159)
1d: PFAM_zf_C2H2_1tf6D04 (D:135-159)
2a: PFAM_zf_H2C2_2_1tf6D05 (D:59-86)
2b: PFAM_zf_H2C2_2_1tf6D06 (D:59-86)
2c: PFAM_zf_H2C2_2_1tf6D07 (D:59-86)
2d: PFAM_zf_H2C2_2_1tf6D08 (D:59-86)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C2H2-zf
(71)
Family
:
zf-C2H2
(11)
Xenopus laevis (African clawed frog)
(3)
1a
zf-C2H2-1tf6D01
D:135-159
1b
zf-C2H2-1tf6D02
D:135-159
1c
zf-C2H2-1tf6D03
D:135-159
1d
zf-C2H2-1tf6D04
D:135-159
Family
:
zf-H2C2_2
(52)
Xenopus laevis (African clawed frog)
(2)
2a
zf-H2C2_2-1tf6D05
D:59-86
2b
zf-H2C2_2-1tf6D06
D:59-86
2c
zf-H2C2_2-1tf6D07
D:59-86
2d
zf-H2C2_2-1tf6D08
D:59-86
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