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1TF6
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (58 KB)
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(1)
Title
:
CO-CRYSTAL STRUCTURE OF XENOPUS TFIIIA ZINC FINGER DOMAIN BOUND TO THE 5S RIBOSOMAL RNA GENE INTERNAL CONTROL REGION
Authors
:
R. T. Nolte, R. M. Conlin, S. C. Harrison, R. S. Brown
Date
:
02 Mar 98 (Deposition) - 10 Jul 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Complex (Transcription Regulation/Dna), Rna Polymerase Iii, Transcription Initiation, Zinc Finger Protein, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. T. Nolte, R. M. Conlin, S. C. Harrison, R. S. Brown
Differing Roles For Zinc Fingers In Dna Recognition: Structure Of A Six-Finger Transcription Factor Iiia Complex.
Proc. Natl. Acad. Sci. Usa V. 95 2938 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 12)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
1c: ZINC ION (ZNc)
1d: ZINC ION (ZNd)
1e: ZINC ION (ZNe)
1f: ZINC ION (ZNf)
1g: ZINC ION (ZNg)
1h: ZINC ION (ZNh)
1i: ZINC ION (ZNi)
1j: ZINC ION (ZNj)
1k: ZINC ION (ZNk)
1l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AN1 (UNKNOWN)
11: AN2 (UNKNOWN)
12: AN3 (UNKNOWN)
13: AN4 (UNKNOWN)
14: AN5 (UNKNOWN)
15: AN6 (UNKNOWN)
16: BC1 (SOFTWARE)
17: BC2 (SOFTWARE)
18: BC3 (SOFTWARE)
19: DN1 (UNKNOWN)
20: DN2 (UNKNOWN)
21: DN3 (UNKNOWN)
22: DN4 (UNKNOWN)
23: DN5 (UNKNOWN)
24: DN6 (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:15 , CYS A:20 , HIS A:33 , HIS A:37
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
CYS A:45 , CYS A:50 , HIS A:63 , HIS A:67
BINDING SITE FOR RESIDUE ZN A 202
03
AC3
SOFTWARE
CYS A:75 , SER A:77 , CYS A:80 , HIS A:93 , HIS A:98
BINDING SITE FOR RESIDUE ZN A 203
04
AC4
SOFTWARE
CYS A:107 , CYS A:112 , HIS A:125 , HIS A:129
BINDING SITE FOR RESIDUE ZN A 204
05
AC5
SOFTWARE
CYS A:137 , CYS A:142 , HIS A:155 , HIS A:159
BINDING SITE FOR RESIDUE ZN A 205
06
AC6
SOFTWARE
CYS A:164 , CYS A:170 , HIS A:183 , HIS A:188
BINDING SITE FOR RESIDUE ZN A 206
07
AC7
SOFTWARE
CYS D:15 , CYS D:20 , HIS D:33 , HIS D:37
BINDING SITE FOR RESIDUE ZN D 201
08
AC8
SOFTWARE
CYS D:45 , CYS D:50 , HIS D:63 , HIS D:67
BINDING SITE FOR RESIDUE ZN D 202
09
AC9
SOFTWARE
CYS D:75 , SER D:77 , CYS D:80 , HIS D:93 , HIS D:98
BINDING SITE FOR RESIDUE ZN D 203
10
AN1
UNKNOWN
CYS A:15 , CYS A:20 , HIS A:33 , HIS A:37
ZN-BINDING SITE.
11
AN2
UNKNOWN
CYS A:45 , CYS A:50 , HIS A:63 , HIS A:67
ZN-BINDING SITE.
12
AN3
UNKNOWN
CYS A:75 , CYS A:80 , HIS A:93 , HIS A:98
ZN-BINDING SITE.
13
AN4
UNKNOWN
CYS A:107 , CYS A:112 , HIS A:125 , HIS A:129
ZN-BINDING SITE.
14
AN5
UNKNOWN
CYS A:137 , CYS A:142 , HIS A:155 , HIS A:159
ZN-BINDING SITE.
15
AN6
UNKNOWN
CYS A:164 , CYS A:170 , HIS A:183 , HIS A:188
ZN-BINDING SITE.
16
BC1
SOFTWARE
CYS D:107 , CYS D:112 , HIS D:125 , HIS D:129
BINDING SITE FOR RESIDUE ZN D 204
17
BC2
SOFTWARE
CYS D:137 , CYS D:142 , HIS D:155 , HIS D:159
BINDING SITE FOR RESIDUE ZN D 205
18
BC3
SOFTWARE
CYS D:164 , CYS D:170 , HIS D:183 , HIS D:188
BINDING SITE FOR RESIDUE ZN D 206
19
DN1
UNKNOWN
CYS D:15 , CYS D:20 , HIS D:33 , HIS D:37
ZN-BINDING SITE.
20
DN2
UNKNOWN
CYS D:45 , CYS D:50 , HIS D:63 , HIS D:67
ZN-BINDING SITE.
21
DN3
UNKNOWN
CYS D:75 , CYS D:80 , HIS D:93 , HIS D:98
ZN-BINDING SITE.
22
DN4
UNKNOWN
CYS D:107 , CYS D:112 , HIS D:125 , HIS D:129
ZN-BINDING SITE.
23
DN5
UNKNOWN
CYS D:137 , CYS D:142 , HIS D:155 , HIS D:159
ZN-BINDING SITE.
24
DN6
UNKNOWN
CYS D:164 , CYS D:170 , HIS D:183 , HIS D:188
'ZN-BINDING
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TF3A_XENLA_001 (T74K, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TF3A_XENLA_001
*
T
96
K
TF3A_XENLA
---
---
A/D
T
74
K
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 10)
Info
All PROSITE Patterns/Profiles
1: ZINC_FINGER_C2H2_1 (A:15-37,D:15-37|A:45-67,D:45-67|A:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_FINGER_C2H2_1
PS00028
Zinc finger C2H2 type domain signature.
TF3A_XENLA
37-59
67-89
97-120
129-151
159-181
216-236
245-268
276-298
10
A:15-37
D:15-37
A:45-67
D:45-67
A:75-98
D:75-98
A:107-129
D:107-129
A:137-159
D:137-159
-
-
-
[
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d1tf6a1 (A:10-40)
1b: SCOP_d1tf6a2 (A:41-70)
1c: SCOP_d1tf6a3 (A:71-100)
1d: SCOP_d1tf6a4 (A:101-131)
1e: SCOP_d1tf6a5 (A:132-160)
1f: SCOP_d1tf6a6 (A:161-188)
1g: SCOP_d1tf6d1 (D:7-40)
1h: SCOP_d1tf6d2 (D:41-70)
1i: SCOP_d1tf6d3 (D:71-100)
1j: SCOP_d1tf6d4 (D:101-131)
1k: SCOP_d1tf6d5 (D:132-160)
1l: SCOP_d1tf6d6 (D:161-188)
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)
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)
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)
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)
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Small proteins
(3458)
Fold
:
beta-beta-alpha zinc fingers
(183)
Superfamily
:
beta-beta-alpha zinc fingers
(183)
Family
:
Classic zinc finger, C2H2
(162)
Protein domain
:
Transcription factor IIIA, TFIIIA
(4)
African clawed frog (Xenopus laevis) [TaxId: 8355]
(4)
1a
d1tf6a1
A:10-40
1b
d1tf6a2
A:41-70
1c
d1tf6a3
A:71-100
1d
d1tf6a4
A:101-131
1e
d1tf6a5
A:132-160
1f
d1tf6a6
A:161-188
1g
d1tf6d1
D:7-40
1h
d1tf6d2
D:41-70
1i
d1tf6d3
D:71-100
1j
d1tf6d4
D:101-131
1k
d1tf6d5
D:132-160
1l
d1tf6d6
D:161-188
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1tf6A05 (A:133-161)
1b: CATH_1tf6D05 (D:133-161)
1c: CATH_1tf6D01 (D:7-39)
1d: CATH_1tf6A01 (A:10-39)
1e: CATH_1tf6A03 (A:69-102)
1f: CATH_1tf6D03 (D:69-102)
1g: CATH_1tf6A06 (A:162-188)
1h: CATH_1tf6D06 (D:162-188)
1i: CATH_1tf6A04 (A:103-132)
1j: CATH_1tf6D04 (D:103-132)
1k: CATH_1tf6A02 (A:40-68)
1l: CATH_1tf6D02 (D:40-68)
View:
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Double Stranded RNA Binding Domain
(204)
Homologous Superfamily
:
Classic Zinc Finger
(45)
[unclassified]
(29)
1a
1tf6A05
A:133-161
1b
1tf6D05
D:133-161
1c
1tf6D01
D:7-39
1d
1tf6A01
A:10-39
1e
1tf6A03
A:69-102
1f
1tf6D03
D:69-102
1g
1tf6A06
A:162-188
1h
1tf6D06
D:162-188
1i
1tf6A04
A:103-132
1j
1tf6D04
D:103-132
1k
1tf6A02
A:40-68
1l
1tf6D02
D:40-68
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_zf_C2H2_1tf6D01 (D:135-159)
1b: PFAM_zf_C2H2_1tf6D02 (D:135-159)
1c: PFAM_zf_C2H2_1tf6D03 (D:135-159)
1d: PFAM_zf_C2H2_1tf6D04 (D:135-159)
2a: PFAM_zf_H2C2_2_1tf6D05 (D:59-86)
2b: PFAM_zf_H2C2_2_1tf6D06 (D:59-86)
2c: PFAM_zf_H2C2_2_1tf6D07 (D:59-86)
2d: PFAM_zf_H2C2_2_1tf6D08 (D:59-86)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
C2H2-zf
(71)
Family
:
zf-C2H2
(11)
Xenopus laevis (African clawed frog)
(3)
1a
zf-C2H2-1tf6D01
D:135-159
1b
zf-C2H2-1tf6D02
D:135-159
1c
zf-C2H2-1tf6D03
D:135-159
1d
zf-C2H2-1tf6D04
D:135-159
Family
:
zf-H2C2_2
(52)
Xenopus laevis (African clawed frog)
(2)
2a
zf-H2C2_2-1tf6D05
D:59-86
2b
zf-H2C2_2-1tf6D06
D:59-86
2c
zf-H2C2_2-1tf6D07
D:59-86
2d
zf-H2C2_2-1tf6D08
D:59-86
[
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]
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