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1TEI
Biol. Unit 3
Info
Asym.Unit (320 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (158 KB)
Biol.Unit 3 (308 KB)
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(1)
Title
:
STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D-MAN-(1,6)[BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)]ALPHA-D-MAN
Authors
:
J. H. Naismith, D. N. Moothoo
Date
:
28 May 97 (Deposition) - 20 Aug 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Lectin, Concanavalin A, Pentasaccharide Binding, Recognition Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. N. Moothoo, J. H. Naismith
Concanavalin A Distorts The Beta-Glcnac-(1-->2)-Man Linkage Of Beta-Glcnac-(1-->2)-Alpha-Man-(1-->3)-[Beta-Glcnac-(1-- >2)-Alpha-Man- (1-->6)]-Man Upon Binding.
Glycobiology V. 8 173 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 40)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MAN
24
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(56, 56)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:98 , SER A:168 , GLY A:224 , THR A:226 , ARG A:228 , LEU A:229 , MAN A:241 , MAN A:242
BINDING SITE FOR RESIDUE NAG A 240
02
AC2
SOFTWARE
ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , ARG A:228 , NAG A:240 , MAN A:242
BINDING SITE FOR RESIDUE MAN A 241
03
AC3
SOFTWARE
TYR A:12 , ASP A:16 , LEU A:99 , TYR A:100 , NAG A:240 , MAN A:241 , MAN A:243 , HOH A:248
BINDING SITE FOR RESIDUE MAN A 242
04
AC4
SOFTWARE
TYR A:12 , PRO A:13 , THR A:15 , ASP A:16 , MAN A:242 , NAG A:244
BINDING SITE FOR RESIDUE MAN A 243
05
AC5
SOFTWARE
PRO A:13 , HIS A:205 , MAN A:243 , GLU G:87
BINDING SITE FOR RESIDUE NAG A 244
06
AC6
SOFTWARE
GLY B:98 , SER B:168 , GLY B:224 , THR B:226 , ARG B:228 , LEU B:229 , MAN B:241
BINDING SITE FOR RESIDUE NAG B 240
07
AC7
SOFTWARE
ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , ARG B:228 , NAG B:240 , MAN B:242
BINDING SITE FOR RESIDUE MAN B 241
08
AC8
SOFTWARE
TYR B:12 , LEU B:99 , MAN B:241 , MAN B:243
BINDING SITE FOR RESIDUE MAN B 242
09
AC9
SOFTWARE
TYR B:12 , PRO B:13 , ASN B:14 , THR B:15 , ASP B:16 , MAN B:242 , NAG B:244 , GLN G:43 , ASN G:44 , LYS G:46
BINDING SITE FOR RESIDUE MAN B 243
10
BC1
SOFTWARE
TYR B:12 , PRO B:13 , HIS B:205 , MAN B:243 , GLN G:43
BINDING SITE FOR RESIDUE NAG B 244
11
BC2
SOFTWARE
GLY C:98 , SER C:168 , GLY C:224 , THR C:226 , ARG C:228 , LEU C:229 , MAN C:241
BINDING SITE FOR RESIDUE NAG C 240
12
BC3
SOFTWARE
ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , ARG C:228 , NAG C:240 , MAN C:242
BINDING SITE FOR RESIDUE MAN C 241
13
BC4
SOFTWARE
TYR C:12 , ASP C:16 , LEU C:99 , MAN C:241 , MAN C:243 , HOH C:248
BINDING SITE FOR RESIDUE MAN C 242
14
BC5
SOFTWARE
TYR C:12 , PRO C:13 , ASN C:14 , THR C:15 , ASP C:16 , MAN C:242 , NAG C:244
BINDING SITE FOR RESIDUE MAN C 243
15
BC6
SOFTWARE
TYR C:12 , PRO C:13 , HIS C:205 , MAN C:243
BINDING SITE FOR RESIDUE NAG C 244
16
BC7
SOFTWARE
GLY D:98 , SER D:168 , GLY D:224 , THR D:226 , ARG D:228 , LEU D:229 , MAN D:241 , ASP F:218
BINDING SITE FOR RESIDUE NAG D 240
17
BC8
SOFTWARE
ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , ARG D:228 , NAG D:240 , MAN D:242
BINDING SITE FOR RESIDUE MAN D 241
18
BC9
SOFTWARE
TYR D:12 , ASP D:16 , LEU D:99 , MAN D:241 , MAN D:243 , HOH D:246
BINDING SITE FOR RESIDUE MAN D 242
19
CC1
SOFTWARE
TYR D:12 , PRO D:13 , ASN D:14 , THR D:15 , ASP D:16 , MAN D:242 , NAG D:244
BINDING SITE FOR RESIDUE MAN D 243
20
CC2
SOFTWARE
PRO D:13 , MAN D:243
BINDING SITE FOR RESIDUE NAG D 244
21
CC3
SOFTWARE
ASP C:218 , GLY E:98 , SER E:168 , GLY E:224 , THR E:226 , ARG E:228 , LEU E:229 , MAN E:241
BINDING SITE FOR RESIDUE NAG E 240
22
CC4
SOFTWARE
ASN E:14 , GLY E:98 , LEU E:99 , TYR E:100 , ALA E:207 , ASP E:208 , GLY E:227 , ARG E:228 , NAG E:240 , MAN E:242
BINDING SITE FOR RESIDUE MAN E 241
23
CC5
SOFTWARE
TYR E:12 , ASP E:16 , LEU E:99 , MAN E:241 , MAN E:243 , HOH E:248
BINDING SITE FOR RESIDUE MAN E 242
24
CC6
SOFTWARE
TYR E:12 , PRO E:13 , ASN E:14 , THR E:15 , ASP E:16 , MAN E:242 , NAG E:244
BINDING SITE FOR RESIDUE MAN E 243
25
CC7
SOFTWARE
LYS C:30 , ASN C:83 , PRO E:13 , HIS E:205 , MAN E:243
BINDING SITE FOR RESIDUE NAG E 244
26
CC8
SOFTWARE
GLY F:98 , LEU F:99 , SER F:168 , GLY F:224 , THR F:226 , MAN F:241
BINDING SITE FOR RESIDUE NAG F 240
27
CC9
SOFTWARE
ASN F:14 , GLY F:98 , LEU F:99 , TYR F:100 , ALA F:207 , ASP F:208 , ARG F:228 , NAG F:240 , MAN F:242
BINDING SITE FOR RESIDUE MAN F 241
28
DC1
SOFTWARE
ASP F:16 , LEU F:99 , MAN F:241 , MAN F:243
BINDING SITE FOR RESIDUE MAN F 242
29
DC2
SOFTWARE
LYS A:35 , PRO F:13 , THR F:15 , ASP F:16 , MAN F:242 , NAG F:244
BINDING SITE FOR RESIDUE MAN F 243
30
DC3
SOFTWARE
MAN F:243
BINDING SITE FOR RESIDUE NAG F 244
31
DC4
SOFTWARE
GLY G:98 , SER G:168 , GLY G:224 , THR G:226 , ARG G:228 , LEU G:229 , MAN G:241
BINDING SITE FOR RESIDUE NAG G 240
32
DC5
SOFTWARE
ASN G:14 , GLY G:98 , LEU G:99 , TYR G:100 , ALA G:207 , ASP G:208 , ARG G:228 , NAG G:240 , MAN G:242
BINDING SITE FOR RESIDUE MAN G 241
33
DC6
SOFTWARE
TYR G:12 , ASP G:16 , LEU G:99 , MAN G:241 , MAN G:243 , HOH G:248
BINDING SITE FOR RESIDUE MAN G 242
34
DC7
SOFTWARE
TYR G:12 , PRO G:13 , ASN G:14 , THR G:15 , ASP G:16 , MAN G:242 , NAG G:244
BINDING SITE FOR RESIDUE MAN G 243
35
DC8
SOFTWARE
TYR G:12 , PRO G:13 , MAN G:243
BINDING SITE FOR RESIDUE NAG G 244
36
DC9
SOFTWARE
GLY H:98 , SER H:168 , GLY H:224 , THR H:226 , ARG H:228 , LEU H:229 , MAN H:241
BINDING SITE FOR RESIDUE NAG H 240
37
EC1
SOFTWARE
ASN H:14 , GLY H:98 , LEU H:99 , TYR H:100 , ASP H:208 , GLY H:227 , ARG H:228 , NAG H:240 , MAN H:242
BINDING SITE FOR RESIDUE MAN H 241
38
EC2
SOFTWARE
ASP H:16 , MAN H:241 , MAN H:243
BINDING SITE FOR RESIDUE MAN H 242
39
EC3
SOFTWARE
PRO H:13 , ASN H:14 , THR H:15 , ASP H:16 , MAN H:242 , NAG H:244
BINDING SITE FOR RESIDUE MAN H 243
40
EC4
SOFTWARE
MAN H:243
BINDING SITE FOR RESIDUE NAG H 244
41
EC5
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:246 , HOH A:247
BINDING SITE FOR RESIDUE MN A 238
42
EC6
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:245
BINDING SITE FOR RESIDUE CA A 239
43
EC7
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:246 , HOH B:247
BINDING SITE FOR RESIDUE MN B 238
44
EC8
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:245 , HOH B:248
BINDING SITE FOR RESIDUE CA B 239
45
EC9
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:246 , HOH C:247
BINDING SITE FOR RESIDUE MN C 238
46
FC1
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:245 , HOH C:257
BINDING SITE FOR RESIDUE CA C 239
47
FC2
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:245
BINDING SITE FOR RESIDUE MN D 238
48
FC3
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19
BINDING SITE FOR RESIDUE CA D 239
49
FC4
SOFTWARE
GLU E:8 , ASP E:10 , ASP E:19 , HIS E:24 , HOH E:246 , HOH E:247
BINDING SITE FOR RESIDUE MN E 238
50
FC5
SOFTWARE
ASP E:10 , TYR E:12 , ASN E:14 , ASP E:19 , HOH E:245 , HOH E:262
BINDING SITE FOR RESIDUE CA E 239
51
FC6
SOFTWARE
GLU F:8 , ASP F:10 , ASP F:19 , HIS F:24 , HOH F:245 , HOH F:246
BINDING SITE FOR RESIDUE MN F 238
52
FC7
SOFTWARE
ASP F:10 , ASN F:14 , ASP F:19
BINDING SITE FOR RESIDUE CA F 239
53
FC8
SOFTWARE
GLU G:8 , ASP G:10 , ASP G:19 , HIS G:24 , HOH G:246 , HOH G:247
BINDING SITE FOR RESIDUE MN G 238
54
FC9
SOFTWARE
ASP G:10 , TYR G:12 , ASN G:14 , ASP G:19 , HOH G:245 , HOH G:249
BINDING SITE FOR RESIDUE CA G 239
55
GC1
SOFTWARE
GLU H:8 , ASP H:10 , ASP H:19 , HIS H:24 , HOH H:248
BINDING SITE FOR RESIDUE MN H 245
56
GC2
SOFTWARE
ASP H:10 , ASN H:14 , ASP H:19 , HOH H:247
BINDING SITE FOR RESIDUE CA H 246
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1teia_ (A:)
1b: SCOP_d1teib_ (B:)
1c: SCOP_d1teic_ (C:)
1d: SCOP_d1teid_ (D:)
1e: SCOP_d1teie_ (E:)
1f: SCOP_d1teif_ (F:)
1g: SCOP_d1teig_ (G:)
1h: SCOP_d1teih_ (H:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d1teia_
A:
1b
d1teib_
B:
1c
d1teic_
C:
1d
d1teid_
D:
1e
d1teie_
E:
1f
d1teif_
F:
1g
d1teig_
G:
1h
d1teih_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1teiA00 (A:1-237)
1b: CATH_1teiB00 (B:1-237)
1c: CATH_1teiC00 (C:1-237)
1d: CATH_1teiD00 (D:1-237)
1e: CATH_1teiE00 (E:1-237)
1f: CATH_1teiF00 (F:1-237)
1g: CATH_1teiG00 (G:1-237)
1h: CATH_1teiH00 (H:1-237)
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(
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
1teiA00
A:1-237
1b
1teiB00
B:1-237
1c
1teiC00
C:1-237
1d
1teiD00
D:1-237
1e
1teiE00
E:1-237
1f
1teiF00
F:1-237
1g
1teiG00
G:1-237
1h
1teiH00
H:1-237
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1teiH01 (H:124-237)
1b: PFAM_Lectin_legB_1teiH02 (H:124-237)
1c: PFAM_Lectin_legB_1teiH03 (H:124-237)
1d: PFAM_Lectin_legB_1teiH04 (H:124-237)
1e: PFAM_Lectin_legB_1teiH05 (H:124-237)
1f: PFAM_Lectin_legB_1teiH06 (H:124-237)
1g: PFAM_Lectin_legB_1teiH07 (H:124-237)
1h: PFAM_Lectin_legB_1teiH08 (H:124-237)
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Organisms
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(
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Canavalia ensiformis (Jack bean) (Horse bean)
(17)
1a
Lectin_legB-1teiH01
H:124-237
1b
Lectin_legB-1teiH02
H:124-237
1c
Lectin_legB-1teiH03
H:124-237
1d
Lectin_legB-1teiH04
H:124-237
1e
Lectin_legB-1teiH05
H:124-237
1f
Lectin_legB-1teiH06
H:124-237
1g
Lectin_legB-1teiH07
H:124-237
1h
Lectin_legB-1teiH08
H:124-237
[
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(currently selected atoms:
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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