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1TEI
Biol. Unit 1
Info
Asym.Unit (320 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (158 KB)
Biol.Unit 3 (308 KB)
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(1)
Title
:
STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D-MAN-(1,6)[BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)]ALPHA-D-MAN
Authors
:
J. H. Naismith, D. N. Moothoo
Date
:
28 May 97 (Deposition) - 20 Aug 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Lectin, Concanavalin A, Pentasaccharide Binding, Recognition Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. N. Moothoo, J. H. Naismith
Concanavalin A Distorts The Beta-Glcnac-(1-->2)-Man Linkage Of Beta-Glcnac-(1-->2)-Alpha-Man-(1-->3)-[Beta-Glcnac-(1-- >2)-Alpha-Man- (1-->6)]-Man Upon Binding.
Glycobiology V. 8 173 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 20)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
MAN
12
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
-1
Ligand/Ion
MANGANESE (II) ION
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC7 (SOFTWARE)
23: DC2 (SOFTWARE)
24: EC5 (SOFTWARE)
25: EC6 (SOFTWARE)
26: EC7 (SOFTWARE)
27: EC8 (SOFTWARE)
28: EC9 (SOFTWARE)
29: FC1 (SOFTWARE)
30: FC2 (SOFTWARE)
31: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:98 , SER A:168 , GLY A:224 , THR A:226 , ARG A:228 , LEU A:229 , MAN A:241 , MAN A:242
BINDING SITE FOR RESIDUE NAG A 240
02
AC2
SOFTWARE
ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , ARG A:228 , NAG A:240 , MAN A:242
BINDING SITE FOR RESIDUE MAN A 241
03
AC3
SOFTWARE
TYR A:12 , ASP A:16 , LEU A:99 , TYR A:100 , NAG A:240 , MAN A:241 , MAN A:243 , HOH A:248
BINDING SITE FOR RESIDUE MAN A 242
04
AC4
SOFTWARE
TYR A:12 , PRO A:13 , THR A:15 , ASP A:16 , MAN A:242 , NAG A:244
BINDING SITE FOR RESIDUE MAN A 243
05
AC5
SOFTWARE
PRO A:13 , HIS A:205 , MAN A:243 , GLU G:87
BINDING SITE FOR RESIDUE NAG A 244
06
AC6
SOFTWARE
GLY B:98 , SER B:168 , GLY B:224 , THR B:226 , ARG B:228 , LEU B:229 , MAN B:241
BINDING SITE FOR RESIDUE NAG B 240
07
AC7
SOFTWARE
ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , ARG B:228 , NAG B:240 , MAN B:242
BINDING SITE FOR RESIDUE MAN B 241
08
AC8
SOFTWARE
TYR B:12 , LEU B:99 , MAN B:241 , MAN B:243
BINDING SITE FOR RESIDUE MAN B 242
09
AC9
SOFTWARE
TYR B:12 , PRO B:13 , ASN B:14 , THR B:15 , ASP B:16 , MAN B:242 , NAG B:244 , GLN G:43 , ASN G:44 , LYS G:46
BINDING SITE FOR RESIDUE MAN B 243
10
BC1
SOFTWARE
TYR B:12 , PRO B:13 , HIS B:205 , MAN B:243 , GLN G:43
BINDING SITE FOR RESIDUE NAG B 244
11
BC2
SOFTWARE
GLY C:98 , SER C:168 , GLY C:224 , THR C:226 , ARG C:228 , LEU C:229 , MAN C:241
BINDING SITE FOR RESIDUE NAG C 240
12
BC3
SOFTWARE
ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , ARG C:228 , NAG C:240 , MAN C:242
BINDING SITE FOR RESIDUE MAN C 241
13
BC4
SOFTWARE
TYR C:12 , ASP C:16 , LEU C:99 , MAN C:241 , MAN C:243 , HOH C:248
BINDING SITE FOR RESIDUE MAN C 242
14
BC5
SOFTWARE
TYR C:12 , PRO C:13 , ASN C:14 , THR C:15 , ASP C:16 , MAN C:242 , NAG C:244
BINDING SITE FOR RESIDUE MAN C 243
15
BC6
SOFTWARE
TYR C:12 , PRO C:13 , HIS C:205 , MAN C:243
BINDING SITE FOR RESIDUE NAG C 244
16
BC7
SOFTWARE
GLY D:98 , SER D:168 , GLY D:224 , THR D:226 , ARG D:228 , LEU D:229 , MAN D:241 , ASP F:218
BINDING SITE FOR RESIDUE NAG D 240
17
BC8
SOFTWARE
ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , ARG D:228 , NAG D:240 , MAN D:242
BINDING SITE FOR RESIDUE MAN D 241
18
BC9
SOFTWARE
TYR D:12 , ASP D:16 , LEU D:99 , MAN D:241 , MAN D:243 , HOH D:246
BINDING SITE FOR RESIDUE MAN D 242
19
CC1
SOFTWARE
TYR D:12 , PRO D:13 , ASN D:14 , THR D:15 , ASP D:16 , MAN D:242 , NAG D:244
BINDING SITE FOR RESIDUE MAN D 243
20
CC2
SOFTWARE
PRO D:13 , MAN D:243
BINDING SITE FOR RESIDUE NAG D 244
21
CC3
SOFTWARE
ASP C:218 , GLY E:98 , SER E:168 , GLY E:224 , THR E:226 , ARG E:228 , LEU E:229 , MAN E:241
BINDING SITE FOR RESIDUE NAG E 240
22
CC7
SOFTWARE
LYS C:30 , ASN C:83 , PRO E:13 , HIS E:205 , MAN E:243
BINDING SITE FOR RESIDUE NAG E 244
23
DC2
SOFTWARE
LYS A:35 , PRO F:13 , THR F:15 , ASP F:16 , MAN F:242 , NAG F:244
BINDING SITE FOR RESIDUE MAN F 243
24
EC5
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:246 , HOH A:247
BINDING SITE FOR RESIDUE MN A 238
25
EC6
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:245
BINDING SITE FOR RESIDUE CA A 239
26
EC7
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:246 , HOH B:247
BINDING SITE FOR RESIDUE MN B 238
27
EC8
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:245 , HOH B:248
BINDING SITE FOR RESIDUE CA B 239
28
EC9
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:246 , HOH C:247
BINDING SITE FOR RESIDUE MN C 238
29
FC1
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:245 , HOH C:257
BINDING SITE FOR RESIDUE CA C 239
30
FC2
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:245
BINDING SITE FOR RESIDUE MN D 238
31
FC3
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19
BINDING SITE FOR RESIDUE CA D 239
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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[
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1teia_ (A:)
1b: SCOP_d1teib_ (B:)
1c: SCOP_d1teic_ (C:)
1d: SCOP_d1teid_ (D:)
1e: SCOP_d1teie_ (E:)
1f: SCOP_d1teif_ (F:)
1g: SCOP_d1teig_ (G:)
1h: SCOP_d1teih_ (H:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d1teia_
A:
1b
d1teib_
B:
1c
d1teic_
C:
1d
d1teid_
D:
1e
d1teie_
E:
1f
d1teif_
F:
1g
d1teig_
G:
1h
d1teih_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1teiA00 (A:1-237)
1b: CATH_1teiB00 (B:1-237)
1c: CATH_1teiC00 (C:1-237)
1d: CATH_1teiD00 (D:1-237)
1e: CATH_1teiE00 (E:1-237)
1f: CATH_1teiF00 (F:1-237)
1g: CATH_1teiG00 (G:1-237)
1h: CATH_1teiH00 (H:1-237)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
1teiA00
A:1-237
1b
1teiB00
B:1-237
1c
1teiC00
C:1-237
1d
1teiD00
D:1-237
1e
1teiE00
E:1-237
1f
1teiF00
F:1-237
1g
1teiG00
G:1-237
1h
1teiH00
H:1-237
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1teiH01 (H:124-237)
1b: PFAM_Lectin_legB_1teiH02 (H:124-237)
1c: PFAM_Lectin_legB_1teiH03 (H:124-237)
1d: PFAM_Lectin_legB_1teiH04 (H:124-237)
1e: PFAM_Lectin_legB_1teiH05 (H:124-237)
1f: PFAM_Lectin_legB_1teiH06 (H:124-237)
1g: PFAM_Lectin_legB_1teiH07 (H:124-237)
1h: PFAM_Lectin_legB_1teiH08 (H:124-237)
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Canavalia ensiformis (Jack bean) (Horse bean)
(17)
1a
Lectin_legB-1teiH01
H:124-237
1b
Lectin_legB-1teiH02
H:124-237
1c
Lectin_legB-1teiH03
H:124-237
1d
Lectin_legB-1teiH04
H:124-237
1e
Lectin_legB-1teiH05
H:124-237
1f
Lectin_legB-1teiH06
H:124-237
1g
Lectin_legB-1teiH07
H:124-237
1h
Lectin_legB-1teiH08
H:124-237
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