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1TEI
Asym. Unit
Info
Asym.Unit (320 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (158 KB)
Biol.Unit 3 (308 KB)
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(1)
Title
:
STRUCTURE OF CONCANAVALIN A COMPLEXED TO BETA-D-GLCNAC (1,2)ALPHA-D-MAN-(1,6)[BETA-D-GLCNAC(1,2)ALPHA-D-MAN (1,6)]ALPHA-D-MAN
Authors
:
J. H. Naismith, D. N. Moothoo
Date
:
28 May 97 (Deposition) - 20 Aug 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Biol. Unit 3: A,B,C,D,E,F,G,H (1x)
Keywords
:
Lectin, Concanavalin A, Pentasaccharide Binding, Recognition Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. N. Moothoo, J. H. Naismith
Concanavalin A Distorts The Beta-Glcnac-(1-->2)-Man Linkage Of Beta-Glcnac-(1-->2)-Alpha-Man-(1-->3)-[Beta-Glcnac-(1-- >2)-Alpha-Man- (1-->6)]-Man Upon Binding.
Glycobiology V. 8 173 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 56)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
3g: MANGANESE (II) ION (MNg)
3h: MANGANESE (II) ION (MNh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
8
Ligand/Ion
CALCIUM ION
2
MAN
24
Ligand/Ion
ALPHA-D-MANNOSE
3
MN
8
Ligand/Ion
MANGANESE (II) ION
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(56, 56)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:98 , SER A:168 , GLY A:224 , THR A:226 , ARG A:228 , LEU A:229 , MAN A:241 , MAN A:242
BINDING SITE FOR RESIDUE NAG A 240
02
AC2
SOFTWARE
ASN A:14 , GLY A:98 , LEU A:99 , TYR A:100 , ALA A:207 , ASP A:208 , ARG A:228 , NAG A:240 , MAN A:242
BINDING SITE FOR RESIDUE MAN A 241
03
AC3
SOFTWARE
TYR A:12 , ASP A:16 , LEU A:99 , TYR A:100 , NAG A:240 , MAN A:241 , MAN A:243 , HOH A:248
BINDING SITE FOR RESIDUE MAN A 242
04
AC4
SOFTWARE
TYR A:12 , PRO A:13 , THR A:15 , ASP A:16 , MAN A:242 , NAG A:244
BINDING SITE FOR RESIDUE MAN A 243
05
AC5
SOFTWARE
PRO A:13 , HIS A:205 , MAN A:243 , GLU G:87
BINDING SITE FOR RESIDUE NAG A 244
06
AC6
SOFTWARE
GLY B:98 , SER B:168 , GLY B:224 , THR B:226 , ARG B:228 , LEU B:229 , MAN B:241
BINDING SITE FOR RESIDUE NAG B 240
07
AC7
SOFTWARE
ASN B:14 , GLY B:98 , LEU B:99 , TYR B:100 , ALA B:207 , ASP B:208 , ARG B:228 , NAG B:240 , MAN B:242
BINDING SITE FOR RESIDUE MAN B 241
08
AC8
SOFTWARE
TYR B:12 , LEU B:99 , MAN B:241 , MAN B:243
BINDING SITE FOR RESIDUE MAN B 242
09
AC9
SOFTWARE
TYR B:12 , PRO B:13 , ASN B:14 , THR B:15 , ASP B:16 , MAN B:242 , NAG B:244 , GLN G:43 , ASN G:44 , LYS G:46
BINDING SITE FOR RESIDUE MAN B 243
10
BC1
SOFTWARE
TYR B:12 , PRO B:13 , HIS B:205 , MAN B:243 , GLN G:43
BINDING SITE FOR RESIDUE NAG B 244
11
BC2
SOFTWARE
GLY C:98 , SER C:168 , GLY C:224 , THR C:226 , ARG C:228 , LEU C:229 , MAN C:241
BINDING SITE FOR RESIDUE NAG C 240
12
BC3
SOFTWARE
ASN C:14 , GLY C:98 , LEU C:99 , TYR C:100 , ALA C:207 , ASP C:208 , ARG C:228 , NAG C:240 , MAN C:242
BINDING SITE FOR RESIDUE MAN C 241
13
BC4
SOFTWARE
TYR C:12 , ASP C:16 , LEU C:99 , MAN C:241 , MAN C:243 , HOH C:248
BINDING SITE FOR RESIDUE MAN C 242
14
BC5
SOFTWARE
TYR C:12 , PRO C:13 , ASN C:14 , THR C:15 , ASP C:16 , MAN C:242 , NAG C:244
BINDING SITE FOR RESIDUE MAN C 243
15
BC6
SOFTWARE
TYR C:12 , PRO C:13 , HIS C:205 , MAN C:243
BINDING SITE FOR RESIDUE NAG C 244
16
BC7
SOFTWARE
GLY D:98 , SER D:168 , GLY D:224 , THR D:226 , ARG D:228 , LEU D:229 , MAN D:241 , ASP F:218
BINDING SITE FOR RESIDUE NAG D 240
17
BC8
SOFTWARE
ASN D:14 , GLY D:98 , LEU D:99 , TYR D:100 , ALA D:207 , ASP D:208 , ARG D:228 , NAG D:240 , MAN D:242
BINDING SITE FOR RESIDUE MAN D 241
18
BC9
SOFTWARE
TYR D:12 , ASP D:16 , LEU D:99 , MAN D:241 , MAN D:243 , HOH D:246
BINDING SITE FOR RESIDUE MAN D 242
19
CC1
SOFTWARE
TYR D:12 , PRO D:13 , ASN D:14 , THR D:15 , ASP D:16 , MAN D:242 , NAG D:244
BINDING SITE FOR RESIDUE MAN D 243
20
CC2
SOFTWARE
PRO D:13 , MAN D:243
BINDING SITE FOR RESIDUE NAG D 244
21
CC3
SOFTWARE
ASP C:218 , GLY E:98 , SER E:168 , GLY E:224 , THR E:226 , ARG E:228 , LEU E:229 , MAN E:241
BINDING SITE FOR RESIDUE NAG E 240
22
CC4
SOFTWARE
ASN E:14 , GLY E:98 , LEU E:99 , TYR E:100 , ALA E:207 , ASP E:208 , GLY E:227 , ARG E:228 , NAG E:240 , MAN E:242
BINDING SITE FOR RESIDUE MAN E 241
23
CC5
SOFTWARE
TYR E:12 , ASP E:16 , LEU E:99 , MAN E:241 , MAN E:243 , HOH E:248
BINDING SITE FOR RESIDUE MAN E 242
24
CC6
SOFTWARE
TYR E:12 , PRO E:13 , ASN E:14 , THR E:15 , ASP E:16 , MAN E:242 , NAG E:244
BINDING SITE FOR RESIDUE MAN E 243
25
CC7
SOFTWARE
LYS C:30 , ASN C:83 , PRO E:13 , HIS E:205 , MAN E:243
BINDING SITE FOR RESIDUE NAG E 244
26
CC8
SOFTWARE
GLY F:98 , LEU F:99 , SER F:168 , GLY F:224 , THR F:226 , MAN F:241
BINDING SITE FOR RESIDUE NAG F 240
27
CC9
SOFTWARE
ASN F:14 , GLY F:98 , LEU F:99 , TYR F:100 , ALA F:207 , ASP F:208 , ARG F:228 , NAG F:240 , MAN F:242
BINDING SITE FOR RESIDUE MAN F 241
28
DC1
SOFTWARE
ASP F:16 , LEU F:99 , MAN F:241 , MAN F:243
BINDING SITE FOR RESIDUE MAN F 242
29
DC2
SOFTWARE
LYS A:35 , PRO F:13 , THR F:15 , ASP F:16 , MAN F:242 , NAG F:244
BINDING SITE FOR RESIDUE MAN F 243
30
DC3
SOFTWARE
MAN F:243
BINDING SITE FOR RESIDUE NAG F 244
31
DC4
SOFTWARE
GLY G:98 , SER G:168 , GLY G:224 , THR G:226 , ARG G:228 , LEU G:229 , MAN G:241
BINDING SITE FOR RESIDUE NAG G 240
32
DC5
SOFTWARE
ASN G:14 , GLY G:98 , LEU G:99 , TYR G:100 , ALA G:207 , ASP G:208 , ARG G:228 , NAG G:240 , MAN G:242
BINDING SITE FOR RESIDUE MAN G 241
33
DC6
SOFTWARE
TYR G:12 , ASP G:16 , LEU G:99 , MAN G:241 , MAN G:243 , HOH G:248
BINDING SITE FOR RESIDUE MAN G 242
34
DC7
SOFTWARE
TYR G:12 , PRO G:13 , ASN G:14 , THR G:15 , ASP G:16 , MAN G:242 , NAG G:244
BINDING SITE FOR RESIDUE MAN G 243
35
DC8
SOFTWARE
TYR G:12 , PRO G:13 , MAN G:243
BINDING SITE FOR RESIDUE NAG G 244
36
DC9
SOFTWARE
GLY H:98 , SER H:168 , GLY H:224 , THR H:226 , ARG H:228 , LEU H:229 , MAN H:241
BINDING SITE FOR RESIDUE NAG H 240
37
EC1
SOFTWARE
ASN H:14 , GLY H:98 , LEU H:99 , TYR H:100 , ASP H:208 , GLY H:227 , ARG H:228 , NAG H:240 , MAN H:242
BINDING SITE FOR RESIDUE MAN H 241
38
EC2
SOFTWARE
ASP H:16 , MAN H:241 , MAN H:243
BINDING SITE FOR RESIDUE MAN H 242
39
EC3
SOFTWARE
PRO H:13 , ASN H:14 , THR H:15 , ASP H:16 , MAN H:242 , NAG H:244
BINDING SITE FOR RESIDUE MAN H 243
40
EC4
SOFTWARE
MAN H:243
BINDING SITE FOR RESIDUE NAG H 244
41
EC5
SOFTWARE
GLU A:8 , ASP A:10 , ASP A:19 , HIS A:24 , HOH A:246 , HOH A:247
BINDING SITE FOR RESIDUE MN A 238
42
EC6
SOFTWARE
ASP A:10 , TYR A:12 , ASN A:14 , ASP A:19 , HOH A:245
BINDING SITE FOR RESIDUE CA A 239
43
EC7
SOFTWARE
GLU B:8 , ASP B:10 , ASP B:19 , HIS B:24 , HOH B:246 , HOH B:247
BINDING SITE FOR RESIDUE MN B 238
44
EC8
SOFTWARE
ASP B:10 , TYR B:12 , ASN B:14 , ASP B:19 , HOH B:245 , HOH B:248
BINDING SITE FOR RESIDUE CA B 239
45
EC9
SOFTWARE
GLU C:8 , ASP C:10 , ASP C:19 , HIS C:24 , HOH C:246 , HOH C:247
BINDING SITE FOR RESIDUE MN C 238
46
FC1
SOFTWARE
ASP C:10 , TYR C:12 , ASN C:14 , ASP C:19 , HOH C:245 , HOH C:257
BINDING SITE FOR RESIDUE CA C 239
47
FC2
SOFTWARE
GLU D:8 , ASP D:10 , ASP D:19 , HIS D:24 , HOH D:245
BINDING SITE FOR RESIDUE MN D 238
48
FC3
SOFTWARE
ASP D:10 , TYR D:12 , ASN D:14 , ASP D:19
BINDING SITE FOR RESIDUE CA D 239
49
FC4
SOFTWARE
GLU E:8 , ASP E:10 , ASP E:19 , HIS E:24 , HOH E:246 , HOH E:247
BINDING SITE FOR RESIDUE MN E 238
50
FC5
SOFTWARE
ASP E:10 , TYR E:12 , ASN E:14 , ASP E:19 , HOH E:245 , HOH E:262
BINDING SITE FOR RESIDUE CA E 239
51
FC6
SOFTWARE
GLU F:8 , ASP F:10 , ASP F:19 , HIS F:24 , HOH F:245 , HOH F:246
BINDING SITE FOR RESIDUE MN F 238
52
FC7
SOFTWARE
ASP F:10 , ASN F:14 , ASP F:19
BINDING SITE FOR RESIDUE CA F 239
53
FC8
SOFTWARE
GLU G:8 , ASP G:10 , ASP G:19 , HIS G:24 , HOH G:246 , HOH G:247
BINDING SITE FOR RESIDUE MN G 238
54
FC9
SOFTWARE
ASP G:10 , TYR G:12 , ASN G:14 , ASP G:19 , HOH G:245 , HOH G:249
BINDING SITE FOR RESIDUE CA G 239
55
GC1
SOFTWARE
GLU H:8 , ASP H:10 , ASP H:19 , HIS H:24 , HOH H:248
BINDING SITE FOR RESIDUE MN H 245
56
GC2
SOFTWARE
ASP H:10 , ASN H:14 , ASP H:19 , HOH H:247
BINDING SITE FOR RESIDUE CA H 246
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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[
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1teia_ (A:)
1b: SCOP_d1teib_ (B:)
1c: SCOP_d1teic_ (C:)
1d: SCOP_d1teid_ (D:)
1e: SCOP_d1teie_ (E:)
1f: SCOP_d1teif_ (F:)
1g: SCOP_d1teig_ (G:)
1h: SCOP_d1teih_ (H:)
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Protein Domains
(
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(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Concanavalin A-like lectins/glucanases
(797)
Superfamily
:
Concanavalin A-like lectins/glucanases
(797)
Family
:
Legume lectins
(238)
Protein domain
:
Concanavalin A
(59)
Jack bean (Canavalia ensiformis) [TaxId: 3823]
(52)
1a
d1teia_
A:
1b
d1teib_
B:
1c
d1teic_
C:
1d
d1teid_
D:
1e
d1teie_
E:
1f
d1teif_
F:
1g
d1teig_
G:
1h
d1teih_
H:
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1teiA00 (A:1-237)
1b: CATH_1teiB00 (B:1-237)
1c: CATH_1teiC00 (C:1-237)
1d: CATH_1teiD00 (D:1-237)
1e: CATH_1teiE00 (E:1-237)
1f: CATH_1teiF00 (F:1-237)
1g: CATH_1teiG00 (G:1-237)
1h: CATH_1teiH00 (H:1-237)
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(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
[code=2.60.120.200, no name defined]
(421)
Jack bean (Canavalia ensiformis)
(50)
1a
1teiA00
A:1-237
1b
1teiB00
B:1-237
1c
1teiC00
C:1-237
1d
1teiD00
D:1-237
1e
1teiE00
E:1-237
1f
1teiF00
F:1-237
1g
1teiG00
G:1-237
1h
1teiH00
H:1-237
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lectin_legB_1teiH01 (H:124-237)
1b: PFAM_Lectin_legB_1teiH02 (H:124-237)
1c: PFAM_Lectin_legB_1teiH03 (H:124-237)
1d: PFAM_Lectin_legB_1teiH04 (H:124-237)
1e: PFAM_Lectin_legB_1teiH05 (H:124-237)
1f: PFAM_Lectin_legB_1teiH06 (H:124-237)
1g: PFAM_Lectin_legB_1teiH07 (H:124-237)
1h: PFAM_Lectin_legB_1teiH08 (H:124-237)
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Organisms
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Clan
:
Concanavalin
(293)
Family
:
Lectin_legB
(93)
Canavalia ensiformis (Jack bean) (Horse bean)
(17)
1a
Lectin_legB-1teiH01
H:124-237
1b
Lectin_legB-1teiH02
H:124-237
1c
Lectin_legB-1teiH03
H:124-237
1d
Lectin_legB-1teiH04
H:124-237
1e
Lectin_legB-1teiH05
H:124-237
1f
Lectin_legB-1teiH06
H:124-237
1g
Lectin_legB-1teiH07
H:124-237
1h
Lectin_legB-1teiH08
H:124-237
[
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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