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1TEH
Biol. Unit 1
Info
Asym.Unit (122 KB)
Biol.Unit 1 (117 KB)
Biol.Unit 2 (115 KB)
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(1)
Title
:
STRUCTURE OF HUMAN LIVER CHICHI ALCOHOL DEHYDROGENASE (A GLUTATHIONE-DEPENDENT FORMALDEHYDE DEHYDROGENASE)
Authors
:
Z. -N. Yang, T. D. Hurley
Date
:
05 Feb 96 (Deposition) - 07 Dec 96 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (2x)
Biol. Unit 2: B (2x)
Keywords
:
Nad+ Dependent Alcohol Dehydrogenase Glutathione Dependent Formaldehyde Dehydrogenase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. N. Yang, W. F. Bosron, T. D. Hurley
Structure Of Human Chi Chi Alcohol Dehydrogenase: A Glutathione-Dependent Formaldehyde Dehydrogenase.
J. Mol. Biol. V. 265 330 1997
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
1b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAD
2
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC6 (SOFTWARE)
4: ZN1 (UNKNOWN)
5: ZN2 (UNKNOWN)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111
BINDING SITE FOR RESIDUE ZN A 375
2
AC2
SOFTWARE
CYS A:46 , HIS A:67 , GLU A:68 , CYS A:174
BINDING SITE FOR RESIDUE ZN A 376
3
AC6
SOFTWARE
HIS A:47 , TYR A:93 , THR A:178 , GLY A:202 , VAL A:203 , ASP A:223 , ILE A:224 , CYS A:268 , ILE A:269 , VAL A:274 , VAL A:292 , GLY A:293 , VAL A:294 , THR A:317 , ALA A:318 , PHE A:319 , ARG A:369 , HOH A:382
BINDING SITE FOR RESIDUE NAD A 377
4
ZN1
UNKNOWN
CYS A:97 , CYS A:100 , CYS A:103 , CYS A:111 , ZN A:375
ZNA1 IN CHITOPH19.ZNC AND CHIPARAM1.ZNC.
5
ZN2
UNKNOWN
CYS A:46 , HIS A:67 , GLU A:68 , CYS A:174 , HOH A:378 , ZN A:376
GLU 68 IS NEARLY-COORDINATED TO THE ZINC, 2.87 ANGSTROMS. HOH A401 IS 3.18 ANGSTROMS TO THE ZINC. ZNB IN CHITOPH19.ZNC AND CHIPARAM1.ZNC. ZNB IS SET TO BOND TO CYS 46, HIS 67 AND CYS 174 IN CHITOPH19.ZNC AND CHIPARAM1.ZNC.
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SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_025823 (L163S, chain A, )
2: VAR_025824 (V309I, chain A, )
3: VAR_048199 (D353E, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_025823
L
163
S
ADHX_HUMAN
Polymorphism
28730623
A
L
163
S
2
UniProt
VAR_025824
V
309
I
ADHX_HUMAN
Polymorphism
28730628
A
V
309
I
3
UniProt
VAR_048199
D
353
E
ADHX_HUMAN
Polymorphism
16996593
A
D
353
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:66-80)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADHX_HUMAN
66-80
2
A:66-80
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1teha1 (A:3-162,A:339-374)
1b: SCOP_d1tehb1 (B:3-162,B:339-374)
2a: SCOP_d1teha2 (A:163-338)
2b: SCOP_d1tehb2 (B:163-338)
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Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
Alcohol dehydrogenase-like, N-terminal domain
(114)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
1a
d1teha1
A:3-162,A:339-374
1b
d1tehb1
B:3-162,B:339-374
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Alcohol dehydrogenase-like, C-terminal domain
(115)
Protein domain
:
Alcohol dehydrogenase
(77)
Human (Homo sapiens), different isozymes [TaxId: 9606]
(24)
2a
d1teha2
A:163-338
2b
d1tehb2
B:163-338
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1tehA02 (A:179-317)
1b: CATH_1tehB02 (B:179-317)
2a: CATH_1tehA01 (A:3-178,A:318-374)
2b: CATH_1tehB01 (B:3-178,B:318-374)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
1a
1tehA02
A:179-317
1b
1tehB02
B:179-317
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Human (Homo sapiens)
(30)
2a
1tehA01
A:3-178,A:318-374
2b
1tehB01
B:3-178,B:318-374
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Pfam Domains
(0, 0)
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Show PDB file:
Asym.Unit (122 KB)
Header - Asym.Unit
Biol.Unit 1 (117 KB)
Header - Biol.Unit 1
Biol.Unit 2 (115 KB)
Header - Biol.Unit 2
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