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Biol. Unit 2
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Asym.Unit (249 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (124 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TYPE III POLYKETIDE SYNTHASE PKS18 FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
R. Sankaranarayanan, V. M. Shanmugam, R. Rukmini
Date
:
25 May 04 (Deposition) - 03 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Thiolase Fold, Substrate Binding Tunnel, Transferase
(Keyword Search:
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Reference
:
R. Sankaranarayanan, P. Saxena, U. B. Marathe, R. S. Gokhale, V. M. Shanmugam, R. Rukmini
A Novel Tunnel In Mycobacterial Type Iii Polyketide Synthas Reveals The Structural Basis For Generating Diverse Metabolites
Nat. Struct. Mol. Biol. V. 11 894 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: MYRISTIC ACID (MYRa)
1b: MYRISTIC ACID (MYRb)
1c: MYRISTIC ACID (MYRc)
1d: MYRISTIC ACID (MYRd)
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No.
Name
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Type
Full Name
1
MYR
2
Ligand/Ion
MYRISTIC ACID
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Sites
(2, 2)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
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No.
Name
Evidence
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Description
1
AC3
SOFTWARE
MET C:83 , SER C:143 , CYS C:205 , ASN C:208 , PHE C:211 , ILE C:220 , HIS C:221 , PHE C:224 , LEU C:266 , ILE C:273 , CYS C:275
BINDING SITE FOR RESIDUE MYR C 3047
2
AC4
SOFTWARE
TYR D:73 , ARG D:81 , PRO D:87 , SER D:143 , CYS D:205 , ASN D:208 , ALA D:209 , PHE D:211 , ILE D:220 , HIS D:221 , PHE D:224 , ILE D:273
BINDING SITE FOR RESIDUE MYR D 3048
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1teda1 (A:22-246)
1b: SCOP_d1teda2 (A:247-393)
1c: SCOP_d1tedb1 (B:31-246)
1d: SCOP_d1tedb2 (B:247-393)
1e: SCOP_d1tedc1 (C:22-246)
1f: SCOP_d1tedc2 (C:247-393)
1g: SCOP_d1tedd1 (D:31-246)
1h: SCOP_d1tedd2 (D:247-393)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thiolase-like
(231)
Superfamily
:
Thiolase-like
(231)
Family
:
Chalcone synthase-like
(56)
Protein domain
:
Polyketide synthase PKS18
(2)
Mycobacterium tuberculosis [TaxId: 1773]
(2)
1a
d1teda1
A:22-246
1b
d1teda2
A:247-393
1c
d1tedb1
B:31-246
1d
d1tedb2
B:247-393
1e
d1tedc1
C:22-246
1f
d1tedc2
C:247-393
1g
d1tedd1
D:31-246
1h
d1tedd2
D:247-393
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_1tedB01 (B:31-244)
1b: CATH_1tedD01 (D:31-244)
1c: CATH_1tedC02 (C:245-393)
1d: CATH_1tedD02 (D:245-393)
1e: CATH_1tedA01 (A:22-244)
1f: CATH_1tedC01 (C:22-244)
1g: CATH_1tedA02 (A:245-393)
1h: CATH_1tedB02 (B:245-393)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Peroxisomal Thiolase; Chain A, domain 1
(130)
Homologous Superfamily
:
[code=3.40.47.10, no name defined]
(130)
Mycobacterium tuberculosis h37rv. Organism_taxid: 83332. Strain: h37rv.
(2)
1a
1tedB01
B:31-244
1b
1tedD01
D:31-244
1c
1tedC02
C:245-393
1d
1tedD02
D:245-393
1e
1tedA01
A:22-244
1f
1tedC01
C:22-244
1g
1tedA02
A:245-393
1h
1tedB02
B:245-393
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_Chal_sti_synt_C_1tedD01 (D:248-392)
1b: PFAM_Chal_sti_synt_C_1tedD02 (D:248-392)
1c: PFAM_Chal_sti_synt_C_1tedD03 (D:248-392)
1d: PFAM_Chal_sti_synt_C_1tedD04 (D:248-392)
2a: PFAM_Chal_sti_synt_N_1tedD05 (D:31-237)
2b: PFAM_Chal_sti_synt_N_1tedD06 (D:31-237)
2c: PFAM_Chal_sti_synt_N_1tedD07 (D:31-237)
2d: PFAM_Chal_sti_synt_N_1tedD08 (D:31-237)
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Clan
:
Thiolase
(72)
Family
:
Chal_sti_synt_C
(11)
Mycobacterium tuberculosis
(2)
1a
Chal_sti_synt_C-1tedD01
D:248-392
1b
Chal_sti_synt_C-1tedD02
D:248-392
1c
Chal_sti_synt_C-1tedD03
D:248-392
1d
Chal_sti_synt_C-1tedD04
D:248-392
Family
:
Chal_sti_synt_N
(11)
Mycobacterium tuberculosis
(2)
2a
Chal_sti_synt_N-1tedD05
D:31-237
2b
Chal_sti_synt_N-1tedD06
D:31-237
2c
Chal_sti_synt_N-1tedD07
D:31-237
2d
Chal_sti_synt_N-1tedD08
D:31-237
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Asymmetric Unit 1
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Asym.Unit (249 KB)
Header - Asym.Unit
Biol.Unit 1 (123 KB)
Header - Biol.Unit 1
Biol.Unit 2 (124 KB)
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