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1TE6
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (143 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN NEURON SPECIFIC ENOLASE AT 1.8 ANGSTROM
Authors
:
G. Chai, J. Brewer, L. Lovelace, T. Aoki, W. Minor, L. Lebioda
Date
:
24 May 04 (Deposition) - 21 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Enolase, Neurons, Isozymes, Surface Charges, Negative Cooperativity, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Chai, J. Brewer, L. Lovelace, T. Aoki, W. Minor, L. Lebioda
Expression, Purification And The 1. 8 A Resolution Crystal Structure Of Human Neuron Specific Enolase
J. Mol. Biol. V. 341 1015 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
3a: PHOSPHATE ION (PO4a)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MG
3
Ligand/Ion
MAGNESIUM ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
TRS
1
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:244 , GLU A:292 , ASP A:317 , HOH A:744 , HOH A:745 , HOH A:746
BINDING SITE FOR RESIDUE MG A 640
2
AC2
SOFTWARE
SER A:39 , PO4 A:642 , HOH A:744 , HOH A:747 , HOH A:748
BINDING SITE FOR RESIDUE MG A 641
3
AC3
SOFTWARE
GLY A:37 , ALA A:38 , SER A:39 , HIS A:157 , LYS A:342 , ARG A:371 , SER A:372 , MG A:641 , HOH A:744 , HOH A:748 , HOH A:811
BINDING SITE FOR RESIDUE PO4 A 642
4
AC4
SOFTWARE
ASP B:244 , GLU B:292 , ASP B:317 , HOH B:749 , HOH B:750 , HOH B:751
BINDING SITE FOR RESIDUE MG B 740
5
AC5
SOFTWARE
LYS B:342 , ARG B:371 , SER B:372
BINDING SITE FOR RESIDUE CL B 742
6
AC6
SOFTWARE
THR A:40 , GLU A:249 , GLN A:297 , HOH A:869 , HOH A:892 , HOH A:894 , HOH A:927
BINDING SITE FOR RESIDUE TRS A 660
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_002354 (P263A, chain A/B, )
2: VAR_002355 (T394A, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_002354
P
264
A
ENOG_HUMAN
Polymorphism
---
A/B
P
263
A
2
UniProt
VAR_002355
T
395
A
ENOG_HUMAN
Polymorphism
---
A/B
T
394
A
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ENOLASE (A:339-352,B:339-352)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENOLASE
PS00164
Enolase signature.
ENOG_HUMAN
340-353
2
A:339-352
B:339-352
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.2 (A:1-28 | B:1-28)
Exon 1.3 (A:28-60 | B:28-60)
Exon 1.4 (A:60-79 | B:60-79)
Exon 1.5 (A:80-103 | B:80-103)
Exon 1.6 (A:103-147 | B:103-147)
Exon 1.7 (A:148-222 | B:148-222)
Exon 1.8 (A:222-288 | B:222-288)
Exon 1.9 (A:288-355 | B:288-355)
Exon 1.10 (A:355-391 | B:355-391)
Exon 1.11 (A:392-411 | B:392-411)
Exon 1.12 (A:411-433 | B:411-433)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.6
06: Boundary 1.6/1.7
07: Boundary 1.7/1.8
08: Boundary 1.8/1.9
09: Boundary 1.9/1.10
10: Boundary 1.10/1.11
11: Boundary 1.11/1.12
12: Boundary 1.12/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000229277
1
ENSE00001102855
chr12:
7023614-7023823
210
ENOG_HUMAN
-
0
0
-
-
1.2
ENST00000229277
2
ENSE00001164484
chr12:
7024985-7025081
97
ENOG_HUMAN
1-29
29
2
A:1-28
B:1-28
28
28
1.3
ENST00000229277
3
ENSE00000716175
chr12:
7025581-7025676
96
ENOG_HUMAN
29-61
33
2
A:28-60
B:28-60
33
33
1.4
ENST00000229277
4
ENSE00000716176
chr12:
7025835-7025893
59
ENOG_HUMAN
61-80
20
2
A:60-79
B:60-79
20
20
1.5
ENST00000229277
5
ENSE00000716177
chr12:
7026202-7026271
70
ENOG_HUMAN
81-104
24
2
A:80-103
B:80-103
24
24
1.6
ENST00000229277
6
ENSE00000716178
chr12:
7026745-7026878
134
ENOG_HUMAN
104-148
45
2
A:103-147
B:103-147
45
45
1.7
ENST00000229277
7
ENSE00001727933
chr12:
7027104-7027326
223
ENOG_HUMAN
149-223
75
2
A:148-222
B:148-222
75
75
1.8
ENST00000229277
8
ENSE00000716183
chr12:
7028730-7028927
198
ENOG_HUMAN
223-289
67
2
A:222-288
B:222-288
67
67
1.9
ENST00000229277
9
ENSE00000716184
chr12:
7030744-7030945
202
ENOG_HUMAN
289-356
68
2
A:288-355
B:288-355
68
68
1.10
ENST00000229277
10
ENSE00001724735
chr12:
7031219-7031327
109
ENOG_HUMAN
356-392
37
2
A:355-391
B:355-391
37
37
1.11
ENST00000229277
11
ENSE00001748845
chr12:
7031507-7031565
59
ENOG_HUMAN
393-412
20
2
A:392-411
B:392-411
20
20
1.12
ENST00000229277
12
ENSE00001102828
chr12:
7031894-7032859
966
ENOG_HUMAN
412-434
23
2
A:411-433
B:411-433
23
23
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1te6a2 (A:1-139)
1b: SCOP_d1te6b2 (B:1-139)
2a: SCOP_d1te6a1 (A:140-433)
2b: SCOP_d1te6b1 (B:140-433)
View:
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)
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Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
Enolase N-terminal domain-like
(88)
Protein domain
:
Enolase
(39)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(9)
1a
d1te6a2
A:1-139
1b
d1te6b2
B:1-139
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
Enolase
(45)
Protein domain
:
Enolase
(39)
Human (Homo sapiens), gamma isoform [TaxId: 9606]
(9)
2a
d1te6a1
A:140-433
2b
d1te6b1
B:140-433
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1te6A01 (A:1-126)
1b: CATH_1te6B01 (B:1-126)
2a: CATH_1te6B02 (B:127-433)
2b: CATH_1te6A02 (A:127-434)
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)
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Human (Homo sapiens)
(3)
1a
1te6A01
A:1-126
1b
1te6B01
B:1-126
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Human (Homo sapiens)
(3)
2a
1te6B02
B:127-433
2b
1te6A02
A:127-434
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Enolase_N_1te6B01 (B:1-133)
1b: PFAM_Enolase_N_1te6B02 (B:1-133)
2a: PFAM_Enolase_C_1te6B03 (B:141-431)
2b: PFAM_Enolase_C_1te6B04 (B:141-431)
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Clans
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(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Enolase_N
(69)
Family
:
Enolase_N
(20)
Homo sapiens (Human)
(3)
1a
Enolase_N-1te6B01
B:1-133
1b
Enolase_N-1te6B02
B:1-133
Clan
:
Enolase_TIM
(82)
Family
:
Enolase_C
(20)
Homo sapiens (Human)
(3)
2a
Enolase_C-1te6B03
B:141-431
2b
Enolase_C-1te6B04
B:141-431
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Asymmetric Unit 1
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Asym.Unit (148 KB)
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