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1TDQ
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR THE INTERACTIONS BETWEEN TENASCINS AND THE C-TYPE LECTIN DOMAINS FROM LECTICANS: EVIDENCE FOR A CROSS-LINKING ROLE FOR TENASCINS
Authors
:
A. Lundell, A. I. Olin, M. Moergelin, S. Al-Karadaghi, A. Aspberg, D. T.
Date
:
24 May 04 (Deposition) - 31 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Extracellular Matrix, Lecticans, Tenascins, Protein-Protein Interactions, C-Type Lectin Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Lundell, A. I. Olin, M. Moergelin, S. Al-Karadaghi, A. Aspberg, D. T. Logan
Structural Basis For Interactions Between Tenascins And Lectican C-Type Lectin Domains: Evidence For A Crosslinking Role For Tenascins
Structure V. 12 1495 2004
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
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Label:
No.
Name
Count
Type
Full Name
1
CA
3
Ligand/Ion
CALCIUM ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN B:88 , ASP B:90 , GLU B:97 , ASN B:111 , ASP B:112 , HOH B:137
BINDING SITE FOR RESIDUE CA B 127
2
AC2
SOFTWARE
ASP B:64 , GLU B:68 , ASN B:91 , GLU B:97 , ASP B:98
BINDING SITE FOR RESIDUE CA B 128
3
AC3
SOFTWARE
GLU B:68 , ASP B:98 , HOH B:139 , HOH B:140 , HOH B:141 , HOH B:142
BINDING SITE FOR RESIDUE CA B 129
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: FN3 (-|A:6-97|-|A:188-271|A:98-187|-|-|...)
2: C_TYPE_LECTIN_2 (B:10-124)
3: C_TYPE_LECTIN_1 (B:99-123)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
TENR_RAT
328-419
505-596
420-504
687-776
597-686
865-953
777-864
1041-1129
954-1040
3
-
A:6-97
-
A:188-271
A:98-187
-
-
-
-
2
C_TYPE_LECTIN_2
PS50041
C-type lectin domain profile.
PGCA_RAT
1921-2035
1
B:10-124
3
C_TYPE_LECTIN_1
PS00615
C-type lectin domain signature.
PGCA_RAT
2010-2034
1
B:99-123
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1tdqa1 (A:1-93)
1b: SCOP_d1tdqa2 (A:94-185)
1c: SCOP_d1tdqa3 (A:186-271)
2a: SCOP_d1tdqb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Tenascin
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1tdqa1
A:1-93
1b
d1tdqa2
A:94-185
1c
d1tdqa3
A:186-271
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
C-type lectin-like
(322)
Superfamily
:
C-type lectin-like
(322)
Family
:
C-type lectin domain
(182)
Protein domain
:
Aggrecan core protein
(1)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
2a
d1tdqb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1tdqB00 (B:1-126)
2a: CATH_1tdqA01 (A:1-94)
2b: CATH_1tdqA02 (A:95-184)
2c: CATH_1tdqA03 (A:185-271)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Mannose-Binding Protein A; Chain A
(180)
Homologous Superfamily
:
Mannose-Binding Protein A, subunit A
(180)
Norway rat (Rattus norvegicus)
(32)
1a
1tdqB00
B:1-126
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Norway rat (Rattus norvegicus)
(32)
2a
1tdqA01
A:1-94
2b
1tdqA02
A:95-184
2c
1tdqA03
A:185-271
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lectin_C_1tdqB01 (B:20-125)
2a: PFAM_fn3_1tdqA01 (A:187-266)
2b: PFAM_fn3_1tdqA02 (A:187-266)
2c: PFAM_fn3_1tdqA03 (A:187-266)
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Clan
:
C_Lectin
(98)
Family
:
Lectin_C
(85)
Rattus norvegicus (Rat)
(33)
1a
Lectin_C-1tdqB01
B:20-125
Clan
:
E-set
(290)
Family
:
fn3
(66)
Rattus norvegicus (Rat)
(3)
2a
fn3-1tdqA01
A:187-266
2b
fn3-1tdqA02
A:187-266
2c
fn3-1tdqA03
A:187-266
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Asymmetric Unit 1
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