PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
1TDI
Asym. Unit
Info
Asym.Unit (82 KB)
Biol.Unit 1 (78 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HGSTA3-3 IN COMPLEX WITH GLUTATHIONE
Authors
:
Y. Gu, J. Guo, A. Pal, S. S. Pan, P. Zimniak, S. V. Singh, X. Ji
Date
:
22 May 04 (Deposition) - 18 Jan 05 (Release) - 17 Sep 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Gst, Hgsta3-3, Steroid Isomerase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Gu, J. Guo, A. Pal, S. S. Pan, P. Zimniak, S. V. Singh, X. Ji
Crystal Structure Of Human Glutathione S-Transferase A3-3 And Mechanistic Implications For Its High Steroid Isomerase Activity.
Biochemistry V. 43 15673 2004
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:9 , ARG A:45 , GLN A:54 , VAL A:55 , PRO A:56 , GLN A:67 , THR A:68 , HOH A:376 , ASP B:101 , ARG B:131 , HOH B:307
BINDING SITE FOR RESIDUE GSH A 223
2
AC2
SOFTWARE
ASP A:101 , ARG A:131 , HOH A:365 , TYR B:9 , ARG B:45 , GLN B:54 , VAL B:55 , PRO B:56 , GLN B:67 , THR B:68 , HOH B:317 , HOH B:318
BINDING SITE FOR RESIDUE GSH B 224
[
close Site info
]
SAPs(SNPs)/Variants
(5, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_062276 (G36E, chain A/B, )
2: VAR_049484 (I71L, chain A/B, )
3: VAR_049485 (N73D, chain A/B, )
4: VAR_062277 (R113Q, chain A/B, )
5: VAR_062278 (A208T, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_062276
G
36
E
GSTA3_HUMAN
Polymorphism
45504096
A/B
G
36
E
2
UniProt
VAR_049484
I
71
L
GSTA3_HUMAN
Polymorphism
1052661
A/B
I
71
L
3
UniProt
VAR_049485
N
73
D
GSTA3_HUMAN
Polymorphism
41273858
A/B
N
73
D
4
UniProt
VAR_062277
R
113
Q
GSTA3_HUMAN
Polymorphism
45602042
A/B
R
113
Q
5
UniProt
VAR_062278
A
208
T
GSTA3_HUMAN
Polymorphism
45620832
A/B
A
208
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:85-207,B:85-207)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTA3_HUMAN
85-207
2
A:85-207
B:85-207
[
close PROSITE info
]
Exons
(6, 12)
Info
All Exons
Exon 1.2a (A:4-29 | B:4-29)
Exon 1.3 (A:30-47 | B:30-47)
Exon 1.4 (A:47-91 | B:47-91)
Exon 1.5b (A:91-138 | B:91-138)
Exon 1.6a (A:139-182 | B:139-182)
Exon 1.7 (A:183-221 | B:183-221)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.1a/1.2a
2: Boundary 1.2a/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5b
5: Boundary 1.5b/1.6a
6: Boundary 1.6a/1.7
7: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000211122
1a
ENSE00001137820
chr6:
52774483-52774439
45
GSTA3_HUMAN
-
0
0
-
-
1.2a
ENST00000211122
2a
ENSE00002201704
chr6:
52770653-52770546
108
GSTA3_HUMAN
1-29
29
2
A:4-29
B:4-29
26
26
1.3
ENST00000211122
3
ENSE00002169186
chr6:
52768525-52768474
52
GSTA3_HUMAN
30-47
18
2
A:30-47
B:30-47
18
18
1.4
ENST00000211122
4
ENSE00002190781
chr6:
52767276-52767144
133
GSTA3_HUMAN
47-91
45
2
A:47-91
B:47-91
45
45
1.5b
ENST00000211122
5b
ENSE00002198784
chr6:
52764873-52764732
142
GSTA3_HUMAN
91-138
48
2
A:91-138
B:91-138
48
48
1.6a
ENST00000211122
6a
ENSE00002199492
chr6:
52762754-52762623
132
GSTA3_HUMAN
139-182
44
2
A:139-182
B:139-182
44
44
1.7
ENST00000211122
7
ENSE00002171449
chr6:
52761726-52761437
290
GSTA3_HUMAN
183-222
40
2
A:183-221
B:183-221
39
39
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1tdia2 (A:81-221)
1b: SCOP_d1tdib2 (B:81-221)
2a: SCOP_d1tdia1 (A:4-80)
2b: SCOP_d1tdib1 (B:4-80)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
automated matches
(50)
Human (Homo sapiens) [TaxId: 9606]
(35)
1a
d1tdia2
A:81-221
1b
d1tdib2
B:81-221
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Human (Homo sapiens) [TaxId: 9606]
(87)
2a
d1tdia1
A:4-80
2b
d1tdib1
B:4-80
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1tdiA01 (A:4-81,A:191-221)
1b: CATH_1tdiB01 (B:4-81,B:191-221)
2a: CATH_1tdiA02 (A:82-190)
2b: CATH_1tdiB02 (B:82-190)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Human (Homo sapiens)
(186)
1a
1tdiA01
A:4-81,A:191-221
1b
1tdiB01
B:4-81,B:191-221
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Human (Homo sapiens)
(119)
2a
1tdiA02
A:82-190
2b
1tdiB02
B:82-190
[
close CATH info
]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_GST_C_1tdiB01 (B:99-192)
1b: PFAM_GST_C_1tdiB02 (B:99-192)
2a: PFAM_GST_N_1tdiB03 (B:5-77)
2b: PFAM_GST_N_1tdiB04 (B:5-77)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Homo sapiens (Human)
(47)
1a
GST_C-1tdiB01
B:99-192
1b
GST_C-1tdiB02
B:99-192
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Homo sapiens (Human)
(45)
2a
GST_N-1tdiB03
B:5-77
2b
GST_N-1tdiB04
B:5-77
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (82 KB)
Header - Asym.Unit
Biol.Unit 1 (78 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1TDI
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
