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1TD9
Biol. Unit 3
Info
Asym.Unit (310 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (104 KB)
Biol.Unit 3 (105 KB)
Biol.Unit 4 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PHOSPHOTRANSACETYLASE FROM BACILLUS SUBTILIS
Authors
:
Q. S. Xu, J. Jancarik, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date
:
21 May 04 (Deposition) - 07 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E (2x)
Biol. Unit 4: F (2x)
Keywords
:
Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
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Reference
:
Q. S. Xu, J. Jancarik, Y. Lou, K. Kuznetsova, A. F. Yakunin, H. Yokota, P. Adams, R. Kim, S. -H. Kim
Crystal Structures Of A Phosphotransacetylase From Bacillus Subtilis And Its Complex With Acetyl Phosphate
J. Struct. Funct. Genom. V. 6 269 2005
(for further references see the
PDB file header
)
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
1i: SULFATE ION (SO4i)
1j: SULFATE ION (SO4j)
1k: SULFATE ION (SO4k)
1l: SULFATE ION (SO4l)
1m: SULFATE ION (SO4m)
1n: SULFATE ION (SO4n)
1o: SULFATE ION (SO4o)
1p: SULFATE ION (SO4p)
1q: SULFATE ION (SO4q)
1r: SULFATE ION (SO4r)
1s: SULFATE ION (SO4s)
1t: SULFATE ION (SO4t)
1u: SULFATE ION (SO4u)
1v: SULFATE ION (SO4v)
1w: SULFATE ION (SO4w)
1x: SULFATE ION (SO4x)
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No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(4, 4)
Info
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1: CC1 (SOFTWARE)
2: CC2 (SOFTWARE)
3: CC3 (SOFTWARE)
4: CC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
CC1
SOFTWARE
ARG E:88 , ASN E:296
BINDING SITE FOR RESIDUE SO4 E 419
2
CC2
SOFTWARE
ARG E:89 , LYS E:92
BINDING SITE FOR RESIDUE SO4 E 420
3
CC3
SOFTWARE
LYS B:40 , GLN E:97 , LYS E:100
BINDING SITE FOR RESIDUE SO4 E 421
4
CC4
SOFTWARE
THR E:129 , SER E:303 , ARG E:304
BINDING SITE FOR RESIDUE SO4 E 422
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1td9a_ (A:)
1b: SCOP_d1td9e_ (E:)
1c: SCOP_d1td9f_ (F:)
1d: SCOP_d1td9b_ (B:)
1e: SCOP_d1td9c_ (C:)
1f: SCOP_d1td9d_ (D:)
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Protein Domains
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Organisms
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Isocitrate/Isopropylmalate dehydrogenase-like
(143)
Superfamily
:
Isocitrate/Isopropylmalate dehydrogenase-like
(143)
Family
:
Phosphotransacetylase
(8)
Protein domain
:
Phosphotransacetylase Pta
(6)
Bacillus subtilis [TaxId: 1423]
(2)
1a
d1td9a_
A:
1b
d1td9e_
E:
1c
d1td9f_
F:
1d
d1td9b_
B:
1e
d1td9c_
C:
1f
d1td9d_
D:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1td9A02 (A:142-295)
1b: CATH_1td9B02 (B:142-295)
1c: CATH_1td9C02 (C:142-295)
1d: CATH_1td9D02 (D:142-295)
1e: CATH_1td9E02 (E:142-295)
1f: CATH_1td9F02 (F:142-295)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Isocitrate/Isopropylmalate dehydrogenase-like
(7)
Bacillus subtilis. Organism_taxid: 1423.
(2)
1a
1td9A02
A:142-295
1b
1td9B02
B:142-295
1c
1td9C02
C:142-295
1d
1td9D02
D:142-295
1e
1td9E02
E:142-295
1f
1td9F02
F:142-295
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_PTA_PTB_1td9F01 (F:3-319)
1b: PFAM_PTA_PTB_1td9F02 (F:3-319)
1c: PFAM_PTA_PTB_1td9F03 (F:3-319)
1d: PFAM_PTA_PTB_1td9F04 (F:3-319)
1e: PFAM_PTA_PTB_1td9F05 (F:3-319)
1f: PFAM_PTA_PTB_1td9F06 (F:3-319)
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Clan
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Iso_DH
(49)
Family
:
PTA_PTB
(5)
Bacillus subtilis
(2)
1a
PTA_PTB-1td9F01
F:3-319
1b
PTA_PTB-1td9F02
F:3-319
1c
PTA_PTB-1td9F03
F:3-319
1d
PTA_PTB-1td9F04
F:3-319
1e
PTA_PTB-1td9F05
F:3-319
1f
PTA_PTB-1td9F06
F:3-319
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Show PDB file:
Asym.Unit (310 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
Biol.Unit 3 (105 KB)
Header - Biol.Unit 3
Biol.Unit 4 (103 KB)
Header - Biol.Unit 4
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