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1TBG
Biol. Unit 5
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Asym.Unit (275 KB)
Biol.Unit 1 (270 KB)
Biol.Unit 2 (71 KB)
Biol.Unit 3 (72 KB)
Biol.Unit 4 (72 KB)
Biol.Unit 5 (70 KB)
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Title
:
BETA-GAMMA DIMER OF THE HETEROTRIMERIC G-PROTEIN TRANSDUCIN
Authors
:
J. S. Sondek, A. Bohm, D. G. Lambright, H. E. Hamm, P. B. Sigler
Date
:
15 Jun 96 (Deposition) - 01 Apr 97 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: C,G (1x)
Biol. Unit 3: B,F (1x)
Biol. Unit 4: D,H (1x)
Biol. Unit 5: A,E (1x)
Keywords
:
Complex (Gtp-Binding-Transducer), Eye, Transducer, Prenylation, Complex (Gtp-Binding-Transducer) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Sondek, A. Bohm, D. G. Lambright, H. E. Hamm, P. B. Sigler
Crystal Structure Of A G-Protein Beta Gamma Dimer At 2. 1A Resolution.
Nature V. 379 369 1996
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(19, 19)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_078279 (L30F, chain A, )
02: VAR_078280 (R52G, chain A, )
03: VAR_078281 (G64V, chain A, )
04: VAR_076644 (D76E, chain A, )
05: VAR_076643 (D76G, chain A, )
06: VAR_076645 (G77S, chain A, )
07: VAR_076646 (K78R, chain A, )
08: VAR_076647 (I80N, chain A, )
09: VAR_076648 (I80T, chain A, )
10: VAR_078282 (H91R, chain A, )
11: VAR_078283 (A92T, chain A, )
12: VAR_078284 (P94S, chain A, )
13: VAR_076649 (L95P, chain A, )
14: VAR_078285 (R96L, chain A, )
15: VAR_076650 (M101V, chain A, )
16: VAR_078286 (A106T, chain A, )
17: VAR_078287 (D118G, chain A, )
18: VAR_076651 (A326T, chain A, )
19: VAR_078288 (K337Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_078279
L
30
F
GBB1_HUMAN
Unclassified (MRD42)
764997309
A
L
30
F
02
UniProt
VAR_078280
R
52
G
GBB1_HUMAN
Disease (MRD42)
---
A
R
52
G
03
UniProt
VAR_078281
G
64
V
GBB1_HUMAN
Disease (MRD42)
---
A
G
64
V
04
UniProt
VAR_076644
D
76
E
GBB1_HUMAN
Disease (MRD42)
869312822
A
D
76
E
05
UniProt
VAR_076643
D
76
G
GBB1_HUMAN
Disease (MRD42)
869312821
A
D
76
G
06
UniProt
VAR_076645
G
77
S
GBB1_HUMAN
Disease (MRD42)
758432471
A
G
77
S
07
UniProt
VAR_076646
K
78
R
GBB1_HUMAN
Disease (MRD42)
869312823
A
K
78
R
08
UniProt
VAR_076647
I
80
N
GBB1_HUMAN
Disease (MRD42)
752746786
A
I
80
N
09
UniProt
VAR_076648
I
80
T
GBB1_HUMAN
Disease (MRD42)
752746786
A
I
80
T
10
UniProt
VAR_078282
H
91
R
GBB1_HUMAN
Unclassified (MRD42)
---
A
H
91
R
11
UniProt
VAR_078283
A
92
T
GBB1_HUMAN
Disease (MRD42)
---
A
A
92
T
12
UniProt
VAR_078284
P
94
S
GBB1_HUMAN
Disease (MRD42)
---
A
P
94
S
13
UniProt
VAR_076649
L
95
P
GBB1_HUMAN
Disease (MRD42)
869312824
A
L
95
P
14
UniProt
VAR_078285
R
96
L
GBB1_HUMAN
Disease (MRD42)
---
A
R
96
L
15
UniProt
VAR_076650
M
101
V
GBB1_HUMAN
Disease (MRD42)
869312825
A
M
101
V
16
UniProt
VAR_078286
A
106
T
GBB1_HUMAN
Disease (MRD42)
---
A
A
106
T
17
UniProt
VAR_078287
D
118
G
GBB1_HUMAN
Disease (MRD42)
---
A
D
118
G
18
UniProt
VAR_076651
A
326
T
GBB1_HUMAN
Disease (MRD42)
869312826
A
A
326
T
19
UniProt
VAR_078288
K
337
Q
GBB1_HUMAN
Unclassified (MRD42)
---
A
K
337
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 13)
Info
All PROSITE Patterns/Profiles
1: G_PROTEIN_GAMMA (E:505-568)
2: WD_REPEATS_1 (A:70-84,A:157-171,A:285-299)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_PROTEIN_GAMMA
PS50058
G-protein gamma subunit domain profile.
GBG1_BOVIN
5-74
1
E:505-568
-
-
-
2
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBB1_BOVIN
70-84
157-171
285-299
3
A:70-84
-
-
-
A:157-171
-
-
-
A:285-299
-
-
-
GBB1_CANLF
70-84
157-171
285-299
3
A:70-84
-
-
-
A:157-171
-
-
-
A:285-299
-
-
-
GBB1_HUMAN
70-84
157-171
285-299
3
A:70-84
-
-
-
A:157-171
-
-
-
A:285-299
-
-
-
GBB1_MOUSE
70-84
157-171
285-299
3
A:70-84
-
-
-
A:157-171
-
-
-
A:285-299
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1tbge_ (E:)
1b: SCOP_d1tbgf_ (F:)
1c: SCOP_d1tbgg_ (G:)
1d: SCOP_d1tbgh_ (H:)
2a: SCOP_d1tbga_ (A:)
2b: SCOP_d1tbgb_ (B:)
2c: SCOP_d1tbgc_ (C:)
2d: SCOP_d1tbgd_ (D:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Non-globular all-alpha subunits of globular proteins
(135)
Superfamily
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Family
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Protein domain
:
Transducin (heterotrimeric G protein), gamma chain
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
1a
d1tbge_
E:
1b
d1tbgf_
F:
1c
d1tbgg_
G:
1d
d1tbgh_
H:
Class
:
All beta proteins
(24004)
Fold
:
7-bladed beta-propeller
(245)
Superfamily
:
WD40 repeat-like
(95)
Family
:
WD40-repeat
(53)
Protein domain
:
beta1-subunit of the signal-transducing G protein heterotrimer
(19)
Cow (Bos taurus) [TaxId: 9913]
(19)
2a
d1tbga_
A:
2b
d1tbgb_
B:
2c
d1tbgc_
C:
2d
d1tbgd_
D:
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1tbgF00 (F:501-565)
1b: CATH_1tbgG00 (G:501-565)
1c: CATH_1tbgH00 (H:501-565)
1d: CATH_1tbgE00 (E:501-568)
2a: CATH_1tbgA00 (A:1-340)
2b: CATH_1tbgB00 (B:1-340)
2c: CATH_1tbgC00 (C:1-340)
2d: CATH_1tbgD00 (D:1-340)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
G Protein Gi Gamma 2
(12)
Homologous Superfamily
:
[code=4.10.260.10, no name defined]
(10)
Cattle (Bos taurus)
(7)
1a
1tbgF00
F:501-565
1b
1tbgG00
G:501-565
1c
1tbgH00
H:501-565
1d
1tbgE00
E:501-568
Class
:
Mainly Beta
(13760)
Architecture
:
7 Propellor
(136)
Topology
:
Methylamine Dehydrogenase; Chain H
(136)
Homologous Superfamily
:
YVTN repeat-like/Quinoprotein amine dehydrogenase
(76)
Cattle (Bos taurus)
(18)
2a
1tbgA00
A:1-340
2b
1tbgB00
B:1-340
2c
1tbgC00
C:1-340
2d
1tbgD00
D:1-340
[
close CATH info
]
Pfam Domains
(2, 32)
Info
all PFAM domains
1a: PFAM_WD40_1tbgD01 (D:304-340)
1b: PFAM_WD40_1tbgD02 (D:304-340)
1c: PFAM_WD40_1tbgD03 (D:304-340)
1d: PFAM_WD40_1tbgD04 (D:304-340)
1e: PFAM_WD40_1tbgD05 (D:304-340)
1f: PFAM_WD40_1tbgD06 (D:304-340)
1g: PFAM_WD40_1tbgD07 (D:304-340)
1h: PFAM_WD40_1tbgD08 (D:304-340)
1i: PFAM_WD40_1tbgD09 (D:304-340)
1j: PFAM_WD40_1tbgD10 (D:304-340)
1k: PFAM_WD40_1tbgD11 (D:304-340)
1l: PFAM_WD40_1tbgD12 (D:304-340)
1m: PFAM_WD40_1tbgD13 (D:304-340)
1n: PFAM_WD40_1tbgD14 (D:304-340)
1o: PFAM_WD40_1tbgD15 (D:304-340)
1p: PFAM_WD40_1tbgD16 (D:304-340)
1q: PFAM_WD40_1tbgD17 (D:304-340)
1r: PFAM_WD40_1tbgD18 (D:304-340)
1s: PFAM_WD40_1tbgD19 (D:304-340)
1t: PFAM_WD40_1tbgD20 (D:304-340)
1u: PFAM_WD40_1tbgD21 (D:304-340)
1v: PFAM_WD40_1tbgD22 (D:304-340)
1w: PFAM_WD40_1tbgD23 (D:304-340)
1x: PFAM_WD40_1tbgD24 (D:304-340)
1y: PFAM_WD40_1tbgD25 (D:304-340)
1z: PFAM_WD40_1tbgD26 (D:304-340)
1aa: PFAM_WD40_1tbgD27 (D:304-340)
1ab: PFAM_WD40_1tbgD28 (D:304-340)
2a: PFAM_G_gamma_1tbgH01 (H:505-565)
2b: PFAM_G_gamma_1tbgH02 (H:505-565)
2c: PFAM_G_gamma_1tbgH03 (H:505-565)
2d: PFAM_G_gamma_1tbgH04 (H:505-565)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Beta_propeller
(192)
Family
:
WD40
(64)
Bos taurus (Bovine)
(19)
1a
WD40-1tbgD01
D:304-340
1b
WD40-1tbgD02
D:304-340
1c
WD40-1tbgD03
D:304-340
1d
WD40-1tbgD04
D:304-340
1e
WD40-1tbgD05
D:304-340
1f
WD40-1tbgD06
D:304-340
1g
WD40-1tbgD07
D:304-340
1h
WD40-1tbgD08
D:304-340
1i
WD40-1tbgD09
D:304-340
1j
WD40-1tbgD10
D:304-340
1k
WD40-1tbgD11
D:304-340
1l
WD40-1tbgD12
D:304-340
1m
WD40-1tbgD13
D:304-340
1n
WD40-1tbgD14
D:304-340
1o
WD40-1tbgD15
D:304-340
1p
WD40-1tbgD16
D:304-340
1q
WD40-1tbgD17
D:304-340
1r
WD40-1tbgD18
D:304-340
1s
WD40-1tbgD19
D:304-340
1t
WD40-1tbgD20
D:304-340
1u
WD40-1tbgD21
D:304-340
1v
WD40-1tbgD22
D:304-340
1w
WD40-1tbgD23
D:304-340
1x
WD40-1tbgD24
D:304-340
1y
WD40-1tbgD25
D:304-340
1z
WD40-1tbgD26
D:304-340
1aa
WD40-1tbgD27
D:304-340
1ab
WD40-1tbgD28
D:304-340
Clan
:
no clan defined [family: G-gamma]
(10)
Family
:
G-gamma
(10)
Bos taurus (Bovine)
(9)
2a
G-gamma-1tbgH01
H:505-565
2b
G-gamma-1tbgH02
H:505-565
2c
G-gamma-1tbgH03
H:505-565
2d
G-gamma-1tbgH04
H:505-565
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Asym.Unit (275 KB)
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