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Asym. Unit
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Asym.Unit (38 KB)
Biol.Unit 1 (34 KB)
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(1)
Title
:
THREE-DIMENSIONAL STRUCTURE OF A RNA-POLYMERASE II BINDING PROTEIN WITH ASSOCIATED LIGAND.
Authors
:
T. Kamenski, S. Heilmeier, T. Meinhart, P. Cramer
Date
:
19 May 04 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha-Beta Protein, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Kamenski, S. Heilmeier, T. Meinhart, P. Cramer
Structure And Mechanism Of Rna Polymerase Ii Ctd Phosphatases.
Mol. Cell V. 15 399 2004
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ASPARTATE BERYLLIUM TRIFLUORIDE (BFDa)
2a: CITRIC ACID (CITa)
3a: MAGNESIUM ION (MGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BFD
1
Mod. Amino Acid
ASPARTATE BERYLLIUM TRIFLUORIDE
2
CIT
1
Ligand/Ion
CITRIC ACID
3
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
BFD A:96 , ASP A:98 , ASN A:207 , HOH A:290 , HOH A:380
BINDING SITE FOR RESIDUE MG A 273
2
AC2
SOFTWARE
SER A:105 , PHE A:106 , ILE A:120 , TYR A:158 , HOH A:329 , HOH A:374
BINDING SITE FOR RESIDUE CIT A 274
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: FCP1 (A:86-244)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FCP1
PS50969
FCP1 homology domain profile.
CTDS1_HUMAN
86-244
1
A:86-244
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Exons
(5, 5)
Info
All Exons
Exon 1.10a (A:76-107)
Exon 1.11a (A:108-126)
Exon 1.12b (A:127-157)
Exon 1.13c (A:158-219)
Exon 1.14f (A:220-256)
View:
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All Exon Boundaries
1: Boundary 1.9c/1.10a
2: Boundary 1.10a/1.11a
3: Boundary 1.11a/1.12b
4: Boundary 1.12b/1.13c
5: Boundary 1.13c/1.14f
6: Boundary 1.14f/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.5a
ENST00000273062
5a
ENSE00001038975
chr2:
219264478-219264880
403
CTDS1_HUMAN
1-23
23
0
-
-
1.9c
ENST00000273062
9c
ENSE00001038976
chr2:
219266287-219266435
149
CTDS1_HUMAN
23-72
50
0
-
-
1.10a
ENST00000273062
10a
ENSE00001038973
chr2:
219266834-219266938
105
CTDS1_HUMAN
73-107
35
1
A:76-107
32
1.11a
ENST00000273062
11a
ENSE00001038977
chr2:
219267072-219267128
57
CTDS1_HUMAN
108-126
19
1
A:108-126
19
1.12b
ENST00000273062
12b
ENSE00001621424
chr2:
219267758-219267850
93
CTDS1_HUMAN
127-157
31
1
A:127-157
31
1.13c
ENST00000273062
13c
ENSE00001038974
chr2:
219267955-219268140
186
CTDS1_HUMAN
158-219
62
1
A:158-219
62
1.14f
ENST00000273062
14f
ENSE00000965954
chr2:
219269020-219270664
1645
CTDS1_HUMAN
220-261
42
1
A:220-256
37
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1ta0a_ (A:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
HAD-like
(349)
Superfamily
:
HAD-like
(349)
Family
:
NLI interacting factor-like phosphatase
(10)
Protein domain
:
Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1ta0a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1ta0A00 (A:76-256)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1000, no name defined]
(211)
Human (Homo sapiens)
(42)
1a
1ta0A00
A:76-256
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_NIF_1ta0A01 (A:91-251)
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Clan
:
HAD
(186)
Family
:
NIF
(7)
Homo sapiens (Human)
(6)
1a
NIF-1ta0A01
A:91-251
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Chain A
Asymmetric Unit 1
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