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1T8W
Asym. Unit
Info
Asym.Unit (454 KB)
Biol.Unit 1 (446 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI AMP NUCLEOSIDASE
Authors
:
Y. Zhang, S. E. Cottet, S. E. Ealick
Date
:
13 May 04 (Deposition) - 17 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Alpha-Beta Fold, Hydrolase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
Y. Zhang, S. E. Cottet, S. E. Ealick
Structure Of Escherichia Coli Amp Nucleosidase Reveals Similarity To Nucleoside Phosphorylases
Structure V. 12 1383 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1t8wa_ (A:)
1b: SCOP_d1t8wb_ (B:)
1c: SCOP_d1t8wc_ (C:)
1d: SCOP_d1t8wd_ (D:)
1e: SCOP_d1t8we_ (E:)
1f: SCOP_d1t8wf_ (F:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Purine and uridine phosphorylases
(283)
Family
:
Purine and uridine phosphorylases
(224)
Protein domain
:
AMP nucleosidase
(5)
Escherichia coli [TaxId: 562]
(4)
1a
d1t8wa_
A:
1b
d1t8wb_
B:
1c
d1t8wc_
C:
1d
d1t8wd_
D:
1e
d1t8we_
E:
1f
d1t8wf_
F:
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_1t8wA01 (A:8-172)
1b: CATH_1t8wB01 (B:8-172)
1c: CATH_1t8wC01 (C:8-172)
1d: CATH_1t8wD01 (D:8-172)
1e: CATH_1t8wE01 (E:8-172)
1f: CATH_1t8wF01 (F:8-172)
2a: CATH_1t8wA02 (A:173-484)
2b: CATH_1t8wB02 (B:173-484)
2c: CATH_1t8wC02 (C:173-484)
2d: CATH_1t8wD02 (D:173-484)
2e: CATH_1t8wE02 (E:173-484)
2f: CATH_1t8wF02 (F:173-484)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
amp nucleosidase, domain 1
(5)
Homologous Superfamily
:
amp nucleosidase, domain 1
(5)
Escherichia coli. Organism_taxid: 562.
(4)
1a
1t8wA01
A:8-172
1b
1t8wB01
B:8-172
1c
1t8wC01
C:8-172
1d
1t8wD01
D:8-172
1e
1t8wE01
E:8-172
1f
1t8wF01
F:8-172
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1580, no name defined]
(194)
Escherichia coli. Organism_taxid: 562.
(30)
2a
1t8wA02
A:173-484
2b
1t8wB02
B:173-484
2c
1t8wC02
C:173-484
2d
1t8wD02
D:173-484
2e
1t8wE02
E:173-484
2f
1t8wF02
F:173-484
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_PNP_UDP_1_1t8wF01 (F:229-452)
1b: PFAM_PNP_UDP_1_1t8wF02 (F:229-452)
1c: PFAM_PNP_UDP_1_1t8wF03 (F:229-452)
1d: PFAM_PNP_UDP_1_1t8wF04 (F:229-452)
1e: PFAM_PNP_UDP_1_1t8wF05 (F:229-452)
1f: PFAM_PNP_UDP_1_1t8wF06 (F:229-452)
2a: PFAM_AMNp_N_1t8wF07 (F:11-172)
2b: PFAM_AMNp_N_1t8wF08 (F:11-172)
2c: PFAM_AMNp_N_1t8wF09 (F:11-172)
2d: PFAM_AMNp_N_1t8wF10 (F:11-172)
2e: PFAM_AMNp_N_1t8wF11 (F:11-172)
2f: PFAM_AMNp_N_1t8wF12 (F:11-172)
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Clan
:
PUP
(121)
Family
:
PNP_UDP_1
(121)
Escherichia coli O157:H7
(16)
1a
PNP_UDP_1-1t8wF01
F:229-452
1b
PNP_UDP_1-1t8wF02
F:229-452
1c
PNP_UDP_1-1t8wF03
F:229-452
1d
PNP_UDP_1-1t8wF04
F:229-452
1e
PNP_UDP_1-1t8wF05
F:229-452
1f
PNP_UDP_1-1t8wF06
F:229-452
Clan
:
no clan defined [family: AMNp_N]
(4)
Family
:
AMNp_N
(4)
Escherichia coli O157:H7
(4)
2a
AMNp_N-1t8wF07
F:11-172
2b
AMNp_N-1t8wF08
F:11-172
2c
AMNp_N-1t8wF09
F:11-172
2d
AMNp_N-1t8wF10
F:11-172
2e
AMNp_N-1t8wF11
F:11-172
2f
AMNp_N-1t8wF12
F:11-172
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