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1T8T
Asym. Unit
Info
Asym.Unit (103 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (195 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN 3-O-SULFOTRANSFERASE-3 WITH BOUND PAP
Authors
:
A. F. Moon, S. C. Edavettal, J. M. Krahn, E. M. Munoz, M. Negishi, R. J. Linhardt, J. Liu, L. C. Pedersen
Date
:
13 May 04 (Deposition) - 31 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Alpha-Beta Motif, Substrate-Binding Cleft, Transferase
(Keyword Search:
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Reference
:
A. F. Moon, S. C. Edavettal, J. M. Krahn, E. M. Munoz, M. Negishi, R. J. Linhardt, J. Liu, L. C. Pedersen
Structural Analysis Of The Sulfotransferase (3-O-Sulfotransferase Isoform 3) Involved In The Biosynthesis Of An Entry Receptor For Herpes Simplex Virus 1
J. Biol. Chem. V. 279 45185 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
2a: CITRIC ACID (CITa)
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No.
Name
Count
Type
Full Name
1
A3P
2
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
2
CIT
1
Ligand/Ion
CITRIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:162 , GLY A:163 , GLY A:164 , THR A:165 , ARG A:166 , ALA A:167 , ARG A:243 , SER A:251 , ILE A:316 , PHE A:349 , PRO A:350 , LEU A:364 , LYS A:368 , GLY A:369 , ARG A:370 , HIS A:372 , HOH A:1309 , HOH A:1311 , HOH A:1312 , HOH A:1314 , HOH A:1319 , HOH A:1357 , HOH A:1382
BINDING SITE FOR RESIDUE A3P A 1302
2
AC2
SOFTWARE
HOH A:1320 , HOH A:1321 , HOH A:1326 , HOH A:1370 , HOH A:1412 , LYS B:162 , GLY B:163 , GLY B:164 , THR B:165 , ARG B:166 , ALA B:167 , ARG B:243 , SER B:251 , ILE B:316 , PHE B:349 , PRO B:350 , LEU B:364 , LYS B:368 , GLY B:369 , ARG B:370 , HIS B:372 , HOH B:1403 , HOH B:1480
BINDING SITE FOR RESIDUE A3P A 1303
3
AC3
SOFTWARE
ASN A:137 , SER A:138 , ARG B:166 , LEU B:364 , GLY B:365 , THR B:367 , LYS B:368 , HOH B:1623 , HOH B:1624
BINDING SITE FOR RESIDUE CIT B 1399
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 4)
Info
All Exons
Exon 1.1 (A:136-200 (gaps) | B:136-200 (gaps...)
Exon 1.2b (A:200-405 (gaps) | B:200-405)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2b
3: Boundary 1.2b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000360954
1
ENSE00002186114
chr17:
14204400-14205389
990
HS3SB_HUMAN
1-185
185
2
A:136-200 (gaps)
B:136-200 (gaps)
67
67
1.2b
ENST00000360954
2b
ENSE00001402333
chr17:
14248345-14252721
4377
HS3SB_HUMAN
185-390
206
2
A:200-405 (gaps)
B:200-405
206
206
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1t8ta_ (A:)
1b: SCOP_d1t8tb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
PAPS sulfotransferase
(54)
Protein domain
:
Heparan sulfate glucosamine 3-O-sulfotransferase 3
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1t8ta_
A:
1b
d1t8tb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1t8tA00 (A:136-406)
1b: CATH_1t8tB00 (B:136-406)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
1t8tA00
A:136-406
1b
1t8tB00
B:136-406
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Sulfotransfer_1_1t8tB01 (B:152-400)
1b: PFAM_Sulfotransfer_1_1t8tB02 (B:152-400)
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Clan
:
P-loop_NTPase
(1112)
Family
:
Sulfotransfer_1
(24)
Homo sapiens (Human)
(16)
1a
Sulfotransfer_1-1t8tB01
B:152-400
1b
Sulfotransfer_1-1t8tB02
B:152-400
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