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1T89
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (103 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HUMAN TYPE III FC GAMMA RECEPTOR IN COMPLEX WITH AN FC FRAGMENT OF IGG1 (HEXAGONAL)
Authors
:
S. Radaev, S. Motyka, W. -H. Fridman, C. Sautes-Fridman, P. D. Sun
Date
:
11 May 04 (Deposition) - 14 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.50
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Fc Gamma Receptor, Igg1, Cd16, Fcgriii, Immunoglobulin, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Radaev, S. Motyka, W. -H. Fridman, C. Sautes-Fridman, P. D. Sun
The Structure Of A Human Type Iii Fcgamma Receptor In Complex With Fc
J. Biol. Chem. V. 276 16469 2001
[
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Hetero Components
(7, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
2a: ALPHA-L-FUCOSE (FUCa)
3a: BETA-L-FUCOSE (FULa)
4a: BETA-D-GALACTOSE (GALa)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
7a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
7b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
7c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
7d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
3
Ligand/Ion
BETA-D-MANNOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
FUL
1
Ligand/Ion
BETA-L-FUCOSE
4
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
5
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NDG
4
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:264 , ASP A:265 , ASN A:297 , NAG A:449 , FUL A:455
BINDING SITE FOR RESIDUE NDG A 448
02
AC2
SOFTWARE
PHE A:241 , ARG A:301 , NDG A:448 , BMA A:450 , MAN A:452
BINDING SITE FOR RESIDUE NAG A 449
03
AC3
SOFTWARE
PHE A:241 , PHE A:243 , NAG A:449 , BMA A:451 , MAN A:452
BINDING SITE FOR RESIDUE BMA A 450
04
AC4
SOFTWARE
BMA A:450
BINDING SITE FOR RESIDUE BMA A 451
05
AC5
SOFTWARE
PHE A:243 , NAG A:449 , BMA A:450 , NDG A:453
BINDING SITE FOR RESIDUE MAN A 452
06
AC6
SOFTWARE
PHE A:243 , LYS A:246 , MAN A:452 , GAL A:454
BINDING SITE FOR RESIDUE NDG A 453
07
AC7
SOFTWARE
PHE A:243 , PRO A:244 , LYS A:246 , GLU A:258 , THR A:260 , NDG A:453
BINDING SITE FOR RESIDUE GAL A 454
08
AC8
SOFTWARE
TYR A:296 , GLU A:382 , NDG A:448
BINDING SITE FOR RESIDUE FUL A 455
09
AC9
SOFTWARE
ASP B:265 , ASN B:297 , NDG B:449 , FUC B:455
BINDING SITE FOR RESIDUE NDG B 448
10
BC1
SOFTWARE
PHE B:241 , ARG B:301 , NDG B:448 , BMA B:450 , MAN B:452
BINDING SITE FOR RESIDUE NDG B 449
11
BC2
SOFTWARE
PHE B:241 , PHE B:243 , NDG B:449 , MAN B:451 , MAN B:452
BINDING SITE FOR RESIDUE BMA B 450
12
BC3
SOFTWARE
BMA B:450 , NAG B:454
BINDING SITE FOR RESIDUE MAN B 451
13
BC4
SOFTWARE
PHE B:243 , NDG B:449 , BMA B:450 , NAG B:453
BINDING SITE FOR RESIDUE MAN B 452
14
BC5
SOFTWARE
PHE B:243 , THR B:260 , MAN B:452
BINDING SITE FOR RESIDUE NAG B 453
15
BC6
SOFTWARE
MAN B:451
BINDING SITE FOR RESIDUE NAG B 454
16
BC7
SOFTWARE
NDG B:448
BINDING SITE FOR RESIDUE FUC B 455
[
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SAPs(SNPs)/Variants
(7, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_003956 (S18R, chain C, )
2: VAR_003963 (S47N, chain C, )
3: VAR_008802 (A60D, chain C, )
4: VAR_003957 (N64D, chain C, )
5: VAR_003964 (I88V, chain C, )
6: VAR_003887 (E356E, chain A/B, )
7: VAR_003888 (M358M, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_003956
S
36
R
FCG3B_HUMAN
Polymorphism
---
C
S
18
R
2
UniProt
VAR_003963
S
65
N
FCG3B_HUMAN
Polymorphism
448740
C
S
47
N
3
UniProt
VAR_008802
A
78
D
FCG3B_HUMAN
Polymorphism
5030738
C
A
60
D
4
UniProt
VAR_003957
N
82
D
FCG3B_HUMAN
Polymorphism
---
C
N
64
D
5
UniProt
VAR_003964
I
106
V
FCG3B_HUMAN
Polymorphism
---
C
I
88
V
6
UniProt
VAR_003887
D
239
E
IGHG1_HUMAN
Unclassified
---
A/B
E
356
E
7
UniProt
VAR_003888
L
241
M
IGHG1_HUMAN
Unclassified
---
A/B
M
358
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (-|A:423-429,B:423-429)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
IGHG1_HUMAN
81-87
306-312
2
-
A:423-429
B:423-429
[
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Exons
(5, 7)
Info
All Exons
Exon 1.4d (C:5-89)
Exon 1.5c (C:89-171)
Exon 2.2 (- | B:231-231)
Exon 2.3b (A:235-341 | B:231-341)
Exon 2.4c (A:341-444 | B:341-443)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.4a/1.4d
2: Boundary 1.4d/1.5c
3: Boundary 1.5c/1.6c
4: Boundary 2.1/2.2
5: Boundary 2.2/2.3b
6: Boundary 2.3b/2.4c
7: Boundary 2.4c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000294800
2a
ENSE00001446005
chr1:
161601158-161600845
314
FCG3B_HUMAN
1-14
14
0
-
-
1.4a
ENST00000294800
4a
ENSE00001613649
chr1:
161600178-161600158
21
FCG3B_HUMAN
14-21
8
0
-
-
1.4d
ENST00000294800
4d
ENSE00001657788
chr1:
161599825-161599568
258
FCG3B_HUMAN
21-107
87
1
C:5-89
85
1.5c
ENST00000294800
5c
ENSE00001623884
chr1:
161596192-161595935
258
FCG3B_HUMAN
107-193
87
1
C:89-171
83
1.6c
ENST00000294800
6c
ENSE00001270482
chr1:
161594429-161592992
1438
FCG3B_HUMAN
193-233
41
0
-
-
2.1
ENST00000390549
1
ENSE00001838294
chr14:
106209408-106209114
295
IGHG1_HUMAN
1-99
99
0
-
-
2.2
ENST00000390549
2
ENSE00001719055
chr14:
106208722-106208678
45
IGHG1_HUMAN
99-114
16
1
-
B:231-231
-
1
2.3b
ENST00000390549
3b
ENSE00001776617
chr14:
106208559-106208230
330
IGHG1_HUMAN
114-224
111
2
A:235-341
B:231-341
107
111
2.4c
ENST00000390549
4c
ENSE00001837466
chr14:
106208132-106207675
458
IGHG1_HUMAN
224-330
107
2
A:341-444
B:341-443
104
103
[
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]
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1t89a1 (A:235-341)
1b: SCOP_d1t89b1 (B:235-341)
2a: SCOP_d1t89a2 (A:342-443)
2b: SCOP_d1t89b2 (B:342-443)
3a: SCOP_d1t89c1 (C:5-86)
3b: SCOP_d1t89c2 (C:87-171)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
(36)
Human (Homo sapiens) [TaxId: 9606]
(31)
1a
d1t89a1
A:235-341
1b
d1t89b1
B:235-341
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
(38)
Human (Homo sapiens) [TaxId: 9606]
(31)
2a
d1t89a2
A:342-443
2b
d1t89b2
B:342-443
Family
:
I set domains
(152)
Protein domain
:
Fc gamma receptor ectodomain (CD32)
(8)
Human (Homo sapiens), III [TaxId: 9606]
(5)
3a
d1t89c1
C:5-86
3b
d1t89c2
C:87-171
[
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]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1t89A02 (A:338-443)
1b: CATH_1t89B02 (B:338-443)
1c: CATH_1t89A01 (A:238-337)
1d: CATH_1t89B01 (B:238-337)
1e: CATH_1t89C02 (C:90-171)
1f: CATH_1t89C01 (C:5-89)
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)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
1t89A02
A:338-443
1b
1t89B02
B:338-443
1c
1t89A01
A:238-337
1d
1t89B01
B:238-337
1e
1t89C02
C:90-171
1f
1t89C01
C:5-89
[
close CATH info
]
Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_C1_set_1t89B01 (B:352-437)
1b: PFAM_C1_set_1t89B02 (B:352-437)
1c: PFAM_C1_set_1t89B03 (B:352-437)
1d: PFAM_C1_set_1t89B04 (B:352-437)
2a: PFAM_Ig_2_1t89C01 (C:90-171)
2b: PFAM_Ig_2_1t89C02 (C:90-171)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1t89B01
B:352-437
1b
C1-set-1t89B02
B:352-437
1c
C1-set-1t89B03
B:352-437
1d
C1-set-1t89B04
B:352-437
Family
:
Ig_2
(52)
Homo sapiens (Human)
(39)
2a
Ig_2-1t89C01
C:90-171
2b
Ig_2-1t89C02
C:90-171
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