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1T7Y
Asym. Unit
Info
Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
ZN-ALPHA-2-GLYCOPROTEIN; BACULO-ZAG PEG 200, NO GLYCEROL
Authors
:
S. L. Delker, A. P. West Jr. , L. Mcdermott, M. W. Kennedy, P. J. Bjorkman
Date
:
11 May 04 (Deposition) - 21 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Mhc Class I Homolog, Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Delker, A. P. West Jr. , L. Mcdermott, M. W. Kennedy, P. J. Bjorkma
Crystallographic Studies Of Ligand Binding By Zn-Alpha2-Glycoprotein.
J. Struct. Biol. V. 148 205 2004
(for further references see the
PDB file header
)
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Hetero Components
(1, 3)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
View:
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Label:
No.
Name
Count
Type
Full Name
1
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:108
BINDING SITE FOR RESIDUE NAG A 310
2
AC2
SOFTWARE
ASP A:209 , HIS A:236 , ASN A:239 , GLN A:243 , NAG A:321
BINDING SITE FOR RESIDUE NAG A 320
3
AC3
SOFTWARE
GLN A:243 , NAG A:320
BINDING SITE FOR RESIDUE NAG A 321
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (A:258-264)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
ZA2G_HUMAN
278-284
1
A:258-264
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Exons
(4, 4)
Info
All Exons
Exon 1.1a (A:5-6)
Exon 1.2b (A:6-93)
Exon 1.4b (A:93-185)
Exon 1.4h (A:185-277)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.4b
4: Boundary 1.4b/1.4h
5: Boundary 1.4h/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000292401
1a
ENSE00001907842
chr7:
99573780-99573568
213
ZA2G_HUMAN
1-26
26
1
A:5-6
2
1.2b
ENST00000292401
2b
ENSE00001055051
chr7:
99569629-99569369
261
ZA2G_HUMAN
26-113
88
1
A:6-93
88
1.4b
ENST00000292401
4b
ENSE00001801964
chr7:
99566053-99565778
276
ZA2G_HUMAN
113-205
93
1
A:93-185
93
1.4h
ENST00000292401
4h
ENSE00001820318
chr7:
99564909-99564353
557
ZA2G_HUMAN
205-298
94
1
A:185-277
93
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1t7ya1 (A:184-277)
2a: SCOP_d1t7ya2 (A:5-183)
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d1t7ya1
A:184-277
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Zinc-alpha-2-glycoprotein, ZAG
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d1t7ya2
A:5-183
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1t7yA01 (A:6-183)
2a: CATH_1t7yA02 (A:184-273)
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Classes
(
)
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Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Human (Homo sapiens)
(249)
1a
1t7yA01
A:6-183
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
2a
1t7yA02
A:184-273
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_C1_set_1t7yA01 (A:191-272)
2a: PFAM_MHC_I_1t7yA02 (A:6-181)
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Organisms
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)
Clan
:
Ig
(577)
Family
:
C1-set
(338)
Homo sapiens (Human)
(218)
1a
C1-set-1t7yA01
A:191-272
Clan
:
MHC
(252)
Family
:
MHC_I
(210)
Homo sapiens (Human)
(144)
2a
MHC_I-1t7yA02
A:6-181
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Chain A
Asymmetric Unit 1
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