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1T7H
Asym. Unit
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Asym.Unit (18 KB)
Biol.Unit 1 (15 KB)
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(1)
Title
:
X-RAY STRUCTURE OF [LYS(-2)-ARG(-1)-DES(17-21)]-ENDOTHELIN-1 PEPTIDE
Authors
:
F. Hoh, R. Cerdan, Q. Kaas, Y. Nishi, L. Chiche, S. Kubo, N. Chino, Y. Kobayashi, C. Dumas, A. Aumelas
Date
:
10 May 04 (Deposition) - 21 Dec 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.13
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Endothelin, Dimer, Salt Bridge, Cysteine Stabilized Helical Motif, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Hoh, R. Cerdan, Q. Kaas, Y. Nishi, L. Chiche, S. Kubo, N. Chino, Y. Kobayashi, C. Dumas, A. Aumelas
High-Resolution X-Ray Structure Of The Unexpectedly Stable Dimer Of The [Lys(-2)-Arg(-1)-Des(17-21)]Endothelin-1 Peptide
Biochemistry V. 43 15154 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071152 (V14D, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071152
V
64
D
EDN1_HUMAN
Disease (QME)
---
A/B
V
14
D
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ENDOTHELIN (A:3-17,B:3-17|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ENDOTHELIN
PS00270
Endothelin family signature.
EDN1_HUMAN
53-67
109-123
2
A:3-17
B:3-17
-
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Exons
(1, 2)
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All Exons
Exon 1.2 (A:1-18 | B:1-18)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000379375
1
ENSE00001480726
chr6:
12290596-12290926
331
EDN1_HUMAN
1-22
22
0
-
-
1.2
ENST00000379375
2
ENSE00000615812
chr6:
12292574-12292742
169
EDN1_HUMAN
22-78
57
2
A:1-18
B:1-18
18
18
1.3
ENST00000379375
3
ENSE00000685322
chr6:
12294174-12294329
156
EDN1_HUMAN
78-130
53
0
-
-
1.4
ENST00000379375
4
ENSE00000685325
chr6:
12294494-12294637
144
EDN1_HUMAN
130-178
49
0
-
-
1.5
ENST00000379375
5
ENSE00001563781
chr6:
12296195-12297427
1233
EDN1_HUMAN
178-212
35
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1t7ha_ (A:)
1b: SCOP_d1t7hb_ (B:)
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Protein Domains
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(
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Organisms
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(
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Class
:
Peptides
(792)
Fold
:
Endothelin-like
(7)
Superfamily
:
Endothelin-like
(7)
Family
:
Endothelin-like
(7)
Protein domain
:
Endothelin-1
(6)
Human (Homo sapiens) [TaxId: 9606]
(4)
1a
d1t7ha_
A:
1b
d1t7hb_
B:
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CATH Domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Endothelin_1t7hB01 (B:1-18)
1b: PFAM_Endothelin_1t7hB02 (B:1-18)
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Clan
:
no clan defined [family: Endothelin]
(3)
Family
:
Endothelin
(3)
Homo sapiens (Human)
(2)
1a
Endothelin-1t7hB01
B:1-18
1b
Endothelin-1t7hB02
B:1-18
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Asym.Unit (18 KB)
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