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1T6X
Asym. Unit
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Asym.Unit (96 KB)
Biol.Unit 1 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ADP BOUND TM379
Authors
:
D. H. Shin, W. Wang, R. Kim, H. Yokota, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date
:
07 May 04 (Deposition) - 10 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.29
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Crystal; Fad Synthetase; Adp; X-Ray Crystallography; Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. H. Shin, W. Wang, R. Kim, H. Yokota, S. -H. Kim
Crystal Structure Of Adp Bound Fad Synthetase
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
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No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:179 , THR A:180 , ALA A:181 , ASN A:182 , VAL A:232 , ILE A:234 , PHE A:237 , GLY A:239 , ASP A:240 , LEU A:241 , TYR A:242
BINDING SITE FOR RESIDUE ADP A 294
2
AC2
SOFTWARE
PRO B:479 , THR B:480 , ALA B:481 , ASN B:482 , GLU B:531 , VAL B:532 , TYR B:533 , ILE B:534 , PHE B:537 , GLY B:539 , ASP B:540 , LEU B:541 , TYR B:542
BINDING SITE FOR RESIDUE ADP B 594
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1t6xa1 (A:159-288)
1b: SCOP_d1t6xb1 (B:459-589)
2a: SCOP_d1t6xa2 (A:2-158)
2b: SCOP_d1t6xb2 (B:302-458)
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Protein Domains
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Reductase/isomerase/elongation factor common domain
(381)
Superfamily
:
Riboflavin kinase-like
(23)
Family
:
ATP-dependent riboflavin kinase-like
(14)
Protein domain
:
Riboflavin kinase domain of bifunctional FAD synthetase
(6)
Thermotoga maritima [TaxId: 2336]
(6)
1a
d1t6xa1
A:159-288
1b
d1t6xb1
B:459-589
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Adenine nucleotide alpha hydrolase-like
(440)
Superfamily
:
Nucleotidylyl transferase
(325)
Family
:
Adenylyltransferase
(56)
Protein domain
:
FMN adenylyltransferase domain of bifunctional FAD synthetase
(6)
Thermotoga maritima [TaxId: 2336]
(6)
2a
d1t6xa2
A:2-158
2b
d1t6xb2
B:302-458
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1t6xA01 (A:2-159)
1b: CATH_1t6xB01 (B:302-459)
2a: CATH_1t6xB02 (B:460-589)
2b: CATH_1t6xA02 (A:160-288)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1
(328)
Thermotoga maritima. Organism_taxid: 2336.
(5)
1a
1t6xA01
A:2-159
1b
1t6xB01
B:302-459
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Elongation Factor Tu (Ef-tu); domain 3
(323)
Homologous Superfamily
:
Riboflavin kinase-like
(22)
Thermotoga maritima. Organism_taxid: 2336.
(4)
2a
1t6xB02
B:460-589
2b
1t6xA02
A:160-288
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FAD_syn_1t6xB01 (B:302-439)
1b: PFAM_FAD_syn_1t6xB02 (B:302-439)
2a: PFAM_Flavokinase_1t6xB03 (B:455-582)
2b: PFAM_Flavokinase_1t6xB04 (B:455-582)
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)
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)
Clan
:
HUP
(230)
Family
:
FAD_syn
(5)
Thermotoga maritima
(4)
1a
FAD_syn-1t6xB01
B:302-439
1b
FAD_syn-1t6xB02
B:302-439
Clan
:
no clan defined [family: Flavokinase]
(12)
Family
:
Flavokinase
(12)
Thermotoga maritima
(4)
2a
Flavokinase-1t6xB03
B:455-582
2b
Flavokinase-1t6xB04
B:455-582
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