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1T6P
Biol. Unit 1
Info
Asym.Unit (827 KB)
Biol.Unit 1 (411 KB)
Biol.Unit 2 (409 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA LYASE FROM RHODOSPORIDIUM TORULOIDES
Authors
:
J. C. Calabrese, D. B. Jordan
Date
:
06 May 04 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Triple Helix Coiled Coil; Mio; Cinnamate, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. Calabrese, D. B. Jordan, A. Boodhoo, S. Sariaslani, T. Vannelli
Crystal Structure Of Phenylalanine Ammonia Lyase: Multiple Helix Dipoles Implicated In Catalysis.
Biochemistry V. 43 11403 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 56)
Info
All Hetero Components
1a: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175a)
1b: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175b)
1c: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175c)
1d: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175d)
1e: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175e)
1f: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175f)
1g: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175g)
1h: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175h)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2be: SELENOMETHIONINE (MSEbe)
2bf: SELENOMETHIONINE (MSEbf)
2bg: SELENOMETHIONINE (MSEbg)
2bh: SELENOMETHIONINE (MSEbh)
2bi: SELENOMETHIONINE (MSEbi)
2bj: SELENOMETHIONINE (MSEbj)
2bk: SELENOMETHIONINE (MSEbk)
2bl: SELENOMETHIONINE (MSEbl)
2bm: SELENOMETHIONINE (MSEbm)
2bn: SELENOMETHIONINE (MSEbn)
2bo: SELENOMETHIONINE (MSEbo)
2bp: SELENOMETHIONINE (MSEbp)
2bq: SELENOMETHIONINE (MSEbq)
2br: SELENOMETHIONINE (MSEbr)
2bs: SELENOMETHIONINE (MSEbs)
2bt: SELENOMETHIONINE (MSEbt)
2bu: SELENOMETHIONINE (MSEbu)
2bv: SELENOMETHIONINE (MSEbv)
2bw: SELENOMETHIONINE (MSEbw)
2bx: SELENOMETHIONINE (MSEbx)
2by: SELENOMETHIONINE (MSEby)
2bz: SELENOMETHIONINE (MSEbz)
2c: SELENOMETHIONINE (MSEc)
2ca: SELENOMETHIONINE (MSEca)
2cb: SELENOMETHIONINE (MSEcb)
2cc: SELENOMETHIONINE (MSEcc)
2cd: SELENOMETHIONINE (MSEcd)
2ce: SELENOMETHIONINE (MSEce)
2cf: SELENOMETHIONINE (MSEcf)
2cg: SELENOMETHIONINE (MSEcg)
2ch: SELENOMETHIONINE (MSEch)
2ci: SELENOMETHIONINE (MSEci)
2cj: SELENOMETHIONINE (MSEcj)
2ck: SELENOMETHIONINE (MSEck)
2cl: SELENOMETHIONINE (MSEcl)
2cm: SELENOMETHIONINE (MSEcm)
2cn: SELENOMETHIONINE (MSEcn)
2co: SELENOMETHIONINE (MSEco)
2cp: SELENOMETHIONINE (MSEcp)
2cq: SELENOMETHIONINE (MSEcq)
2cr: SELENOMETHIONINE (MSEcr)
2cs: SELENOMETHIONINE (MSEcs)
2ct: SELENOMETHIONINE (MSEct)
2cu: SELENOMETHIONINE (MSEcu)
2cv: SELENOMETHIONINE (MSEcv)
2cw: SELENOMETHIONINE (MSEcw)
2cx: SELENOMETHIONINE (MSEcx)
2cy: SELENOMETHIONINE (MSEcy)
2cz: SELENOMETHIONINE (MSEcz)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
175
4
Mod. Amino Acid
3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDAZOL-4-ON
2
MSE
52
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PAL_HISTIDASE (A:207-223,B:207-223,C:207-223,D:20...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAL_HISTIDASE
PS00488
Phenylalanine and histidine ammonia-lyases signature.
PALY_RHOTO
207-223
4
A:207-223
B:207-223
C:207-223
D:207-223
-
-
-
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1t6pa_ (A:)
1b: SCOP_d1t6pe_ (E:)
1c: SCOP_d1t6pf_ (F:)
1d: SCOP_d1t6pg_ (G:)
1e: SCOP_d1t6ph_ (H:)
1f: SCOP_d1t6pb_ (B:)
1g: SCOP_d1t6pc_ (C:)
1h: SCOP_d1t6pd_ (D:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
HAL/PAL-like
(10)
Protein domain
:
Phenylalanine ammonia-lyase, PAL
(4)
Fungus (Rhodosporidium toruloides) [TaxId: 5286]
(3)
1a
d1t6pa_
A:
1b
d1t6pe_
E:
1c
d1t6pf_
F:
1d
d1t6pg_
G:
1e
d1t6ph_
H:
1f
d1t6pb_
B:
1g
d1t6pc_
C:
1h
d1t6pd_
D:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1t6pH01 (H:39-271)
1b: CATH_1t6pC01 (C:27-271)
1c: CATH_1t6pF01 (F:27-271)
1d: CATH_1t6pD01 (D:27-271)
1e: CATH_1t6pA01 (A:28-271)
1f: CATH_1t6pG01 (G:27-271)
1g: CATH_1t6pE01 (E:27-271)
1h: CATH_1t6pB01 (B:27-271)
2a: CATH_1t6pD02 (D:272-545,D:649-716)
2b: CATH_1t6pB02 (B:272-545,B:649-716)
2c: CATH_1t6pE02 (E:272-545,E:649-716)
2d: CATH_1t6pC02 (C:272-545,C:649-716)
2e: CATH_1t6pF02 (F:272-545,F:649-716)
2f: CATH_1t6pH02 (H:272-545,H:649-716)
2g: CATH_1t6pA02 (A:272-545,A:649-716)
2h: CATH_1t6pG02 (G:272-545,G:649-716)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Rhodosporidium toruloides. Organism_taxid: 5286.
(2)
1a
1t6pH01
H:39-271
1b
1t6pC01
C:27-271
1c
1t6pF01
F:27-271
1d
1t6pD01
D:27-271
1e
1t6pA01
A:28-271
1f
1t6pG01
G:27-271
1g
1t6pE01
E:27-271
1h
1t6pB01
B:27-271
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Rhodosporidium toruloides. Organism_taxid: 5286.
(2)
2a
1t6pD02
D:272-545,D:649-716
2b
1t6pB02
B:272-545,B:649-716
2c
1t6pE02
E:272-545,E:649-716
2d
1t6pC02
C:272-545,C:649-716
2e
1t6pF02
F:272-545,F:649-716
2f
1t6pH02
H:272-545,H:649-716
2g
1t6pA02
A:272-545,A:649-716
2h
1t6pG02
G:272-545,G:649-716
[
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]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Lyase_aromatic_1t6pH01 (H:60-565)
1b: PFAM_Lyase_aromatic_1t6pH02 (H:60-565)
1c: PFAM_Lyase_aromatic_1t6pH03 (H:60-565)
1d: PFAM_Lyase_aromatic_1t6pH04 (H:60-565)
1e: PFAM_Lyase_aromatic_1t6pH05 (H:60-565)
1f: PFAM_Lyase_aromatic_1t6pH06 (H:60-565)
1g: PFAM_Lyase_aromatic_1t6pH07 (H:60-565)
1h: PFAM_Lyase_aromatic_1t6pH08 (H:60-565)
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Clan
:
no clan defined [family: Lyase_aromatic]
(3)
Family
:
Lyase_aromatic
(3)
Rhodosporidium toruloides (Yeast) (Rhodotorula gracilis)
(3)
1a
Lyase_aromatic-1t6pH01
H:60-565
1b
Lyase_aromatic-1t6pH02
H:60-565
1c
Lyase_aromatic-1t6pH03
H:60-565
1d
Lyase_aromatic-1t6pH04
H:60-565
1e
Lyase_aromatic-1t6pH05
H:60-565
1f
Lyase_aromatic-1t6pH06
H:60-565
1g
Lyase_aromatic-1t6pH07
H:60-565
1h
Lyase_aromatic-1t6pH08
H:60-565
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Asym.Unit (827 KB)
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