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1T6J
Asym. Unit
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Asym.Unit (218 KB)
Biol.Unit 1 (412 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA LYASE FROM RHODOSPORIDIUM TORULOIDES
Authors
:
J. C. Calabrese, D. B. Jordan
Date
:
06 May 04 (Deposition) - 12 Oct 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Triple Helix Coiled Coil; Mio; Cinnamate, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
J. C. Calabrese, D. B. Jordan, A. Boodhoo, S. Sariaslani, T. Vannelli
Crystal Structure Of Phenylalanine Ammonia Lyase: Multiple Helix Dipoles Implicated In Catalysis.
Biochemistry V. 43 11403 2004
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Hetero Components
(3, 29)
Info
All Hetero Components
1a: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175a)
1b: 3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDA... (175b)
2a: 4-CARBOXYCINNAMIC ACID (CINa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
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No.
Name
Count
Type
Full Name
1
175
2
Mod. Amino Acid
3,5-DIHYDRO-5-METHYLIDENE-4H-IMIDAZOL-4-ON
2
CIN
1
Ligand/Ion
4-CARBOXYCINNAMIC ACID
3
MSE
26
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
175 B:211 , LEU B:266 , ASN B:397 , LYS B:468 , GLU B:496 , GLN B:500
BINDING SITE FOR RESIDUE CIN B 1001
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PAL_HISTIDASE (A:207-223,B:207-223)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAL_HISTIDASE
PS00488
Phenylalanine and histidine ammonia-lyases signature.
PALY_RHOTO
207-223
2
A:207-223
B:207-223
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1t6ja_ (A:)
1b: SCOP_d1t6jb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
L-aspartase-like
(67)
Superfamily
:
L-aspartase-like
(67)
Family
:
HAL/PAL-like
(10)
Protein domain
:
Phenylalanine ammonia-lyase, PAL
(4)
Fungus (Rhodosporidium toruloides) [TaxId: 5286]
(3)
1a
d1t6ja_
A:
1b
d1t6jb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1t6jA01 (A:39-271)
1b: CATH_1t6jB01 (B:39-271)
2a: CATH_1t6jA02 (A:272-545,A:649-716)
2b: CATH_1t6jB02 (B:272-545,B:649-716)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Rhodosporidium toruloides. Organism_taxid: 5286.
(2)
1a
1t6jA01
A:39-271
1b
1t6jB01
B:39-271
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Rhodosporidium toruloides. Organism_taxid: 5286.
(2)
2a
1t6jA02
A:272-545,A:649-716
2b
1t6jB02
B:272-545,B:649-716
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Lyase_aromatic_1t6jB01 (B:60-565)
1b: PFAM_Lyase_aromatic_1t6jB02 (B:60-565)
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Clan
:
no clan defined [family: Lyase_aromatic]
(3)
Family
:
Lyase_aromatic
(3)
Rhodosporidium toruloides (Yeast) (Rhodotorula gracilis)
(3)
1a
Lyase_aromatic-1t6jB01
B:60-565
1b
Lyase_aromatic-1t6jB02
B:60-565
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