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1T5F
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (151 KB)
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(1)
Title
:
ARGINASE I-AOH COMPLEX
Authors
:
H. Shin, E. Cama, D. W. Christianson
Date
:
04 May 04 (Deposition) - 17 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Arginase, Aoh, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Shin, E. Cama, D. W. Christianson
Design Of Amino Acid Aldehydes As Transition-State Analogue Inhibitors Of Arginase
J. Am. Chem. Soc. V. 126 10278 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: (S)-2-AMINO-7,7-DIHYDROXYHEPTANOIC... (DHHa)
1b: (S)-2-AMINO-7,7-DIHYDROXYHEPTANOIC... (DHHb)
1c: (S)-2-AMINO-7,7-DIHYDROXYHEPTANOIC... (DHHc)
2a: MANGANESE (II) ION (MNa)
2b: MANGANESE (II) ION (MNb)
2c: MANGANESE (II) ION (MNc)
2d: MANGANESE (II) ION (MNd)
2e: MANGANESE (II) ION (MNe)
2f: MANGANESE (II) ION (MNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DHH
3
Ligand/Ion
(S)-2-AMINO-7,7-DIHYDROXYHEPTANOIC ACID
2
MN
6
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MN A:1 , HIS A:101 , ASP A:124 , ASP A:128 , ASP A:232 , HOH A:843 , DHH A:1000
BINDING SITE FOR RESIDUE MN A 320
2
AC2
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:320 , HOH A:843 , DHH A:1000
BINDING SITE FOR RESIDUE MN A 1
3
AC3
SOFTWARE
MN B:3 , HIS B:101 , ASP B:124 , ASP B:128 , ASP B:232 , HOH B:844 , DHH B:1001
BINDING SITE FOR RESIDUE MN B 5
4
AC4
SOFTWARE
MN B:5 , ASP B:124 , HIS B:126 , ASP B:232 , ASP B:234 , HOH B:844 , DHH B:1001
BINDING SITE FOR RESIDUE MN B 3
5
AC5
SOFTWARE
MN C:4 , ASP C:124 , HIS C:126 , ASP C:232 , ASP C:234 , HOH C:835 , DHH C:1002
BINDING SITE FOR RESIDUE MN C 2
6
AC6
SOFTWARE
MN C:2 , HIS C:101 , ASP C:124 , ASP C:128 , ASP C:232 , HOH C:835 , DHH C:1002
BINDING SITE FOR RESIDUE MN C 4
7
AC7
SOFTWARE
MN A:1 , HIS A:101 , ASP A:124 , HIS A:126 , ASP A:128 , ASN A:130 , SER A:137 , ALA A:141 , GLY A:142 , ASP A:183 , GLU A:186 , ASP A:232 , GLU A:277 , MN A:320 , HOH A:680 , HOH A:832 , HOH A:837 , HOH A:843
BINDING SITE FOR RESIDUE DHH A 1000
8
AC8
SOFTWARE
MN B:3 , MN B:5 , HIS B:101 , ASP B:124 , HIS B:126 , ASP B:128 , ASN B:130 , SER B:137 , ALA B:141 , GLY B:142 , ASP B:183 , GLU B:186 , ASP B:232 , GLU B:277 , HOH B:658 , HOH B:685 , HOH B:833 , HOH B:844
BINDING SITE FOR RESIDUE DHH B 1001
9
AC9
SOFTWARE
MN C:2 , MN C:4 , HIS C:101 , ASP C:124 , HIS C:126 , ASP C:128 , ASN C:130 , SER C:137 , ALA C:141 , GLY C:142 , ASP C:183 , GLU C:186 , ASP C:232 , GLU C:277 , HOH C:611 , HOH C:834 , HOH C:835 , HOH C:839
BINDING SITE FOR RESIDUE DHH C 1002
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:230-251,B:230-251,C:230-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_RAT
230-251
3
A:230-251
B:230-251
C:230-251
[
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]
Exons
(8, 24)
Info
All Exons
Exon 1.1 (A:6-19 | B:6-19 | C:6-19)
Exon 1.2 (A:20-44 | B:20-44 | C:20-44)
Exon 1.3 (A:44-102 | B:44-102 | C:44-102)
Exon 1.4 (A:102-155 | B:102-155 | C:102-155)
Exon 1.5 (A:156-187 | B:156-187 | C:156-187)
Exon 1.6 (A:187-222 | B:187-222 | C:187-222)
Exon 1.7 (A:222-268 | B:222-268 | C:222-268)
Exon 1.8 (A:268-319 | B:268-319 | C:268-319)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017911
1
ENSRNOE00000127362
chr1:
20998894-20999025
132
ARGI1_RAT
1-19
19
3
A:6-19
B:6-19
C:6-19
14
14
14
1.2
ENSRNOT00000017911
2
ENSRNOE00000127505
chr1:
21003810-21003882
73
ARGI1_RAT
20-44
25
3
A:20-44
B:20-44
C:20-44
25
25
25
1.3
ENSRNOT00000017911
3
ENSRNOE00000127596
chr1:
21005814-21005988
175
ARGI1_RAT
44-102
59
3
A:44-102
B:44-102
C:44-102
59
59
59
1.4
ENSRNOT00000017911
4
ENSRNOE00000126918
chr1:
21008032-21008191
160
ARGI1_RAT
102-155
54
3
A:102-155
B:102-155
C:102-155
54
54
54
1.5
ENSRNOT00000017911
5
ENSRNOE00000126971
chr1:
21009513-21009607
95
ARGI1_RAT
156-187
32
3
A:156-187
B:156-187
C:156-187
32
32
32
1.6
ENSRNOT00000017911
6
ENSRNOE00000127033
chr1:
21010045-21010149
105
ARGI1_RAT
187-222
36
3
A:187-222
B:187-222
C:187-222
36
36
36
1.7
ENSRNOT00000017911
7
ENSRNOE00000127086
chr1:
21010337-21010473
137
ARGI1_RAT
222-268
47
3
A:222-268
B:222-268
C:222-268
47
47
47
1.8
ENSRNOT00000017911
8
ENSRNOE00000127695
chr1:
21010716-21011266
551
ARGI1_RAT
268-323
56
3
A:268-319
B:268-319
C:268-319
52
52
52
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1t5fa1 (A:6-319)
1b: SCOP_d1t5fb_ (B:)
1c: SCOP_d1t5fc_ (C:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(34)
1a
d1t5fa1
A:6-319
1b
d1t5fb_
B:
1c
d1t5fc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1t5fA00 (A:6-319)
1b: CATH_1t5fB00 (B:6-319)
1c: CATH_1t5fC00 (C:6-319)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Norway rat (Rattus norvegicus)
(31)
1a
1t5fA00
A:6-319
1b
1t5fB00
B:6-319
1c
1t5fC00
C:6-319
[
close CATH info
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Arginase_1t5fC01 (C:6-305)
1b: PFAM_Arginase_1t5fC02 (C:6-305)
1c: PFAM_Arginase_1t5fC03 (C:6-305)
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)
Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Rattus norvegicus (Rat)
(19)
1a
Arginase-1t5fC01
C:6-305
1b
Arginase-1t5fC02
C:6-305
1c
Arginase-1t5fC03
C:6-305
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