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1T5C
Asym. Unit
Info
Asym.Unit (116 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MOTOR DOMAIN OF HUMAN KINETOCHORE PROTEIN CENP-E
Authors
:
I. Garcia-Saez, T. Yen, R. H. Wade, F. Kozielski, Structural Proteomics In Europe (Spine)
Date
:
04 May 04 (Deposition) - 10 May 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Kinesin Motor-Domain-Adp Complex, Stranded Beta-Sheet Core With Solvent Exposed Alpha-Helices, Arrow-Head Shape, Structural Proteomics In Europe, Spine, Structural Genomics, Contractile Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Garcia-Saez, T. Yen, R. H. Wade, F. Kozielski
Crystal Structure Of The Motor Domain Of The Human Kinetochore Protein Cenp-E.
J. Mol. Biol. V. 340 1107 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 6)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: NITRATE ION (NO3a)
4a: PIPERAZINE-N,N'-BIS(2-ETHANESULFON... (PINa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
NO3
1
Ligand/Ion
NITRATE ION
4
PIN
1
Ligand/Ion
PIPERAZINE-N,N'-BIS(2-ETHANESULFONIC ACID)
[
close Hetero Component info
]
Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:93 , ADP A:600 , HOH A:617 , HOH A:637 , HOH A:660
BINDING SITE FOR RESIDUE MG A 601
2
AC2
SOFTWARE
THR B:93 , ADP B:700 , HOH B:705
BINDING SITE FOR RESIDUE MG B 702
3
AC3
SOFTWARE
ARG A:12 , ARG A:14 , PRO A:15 , GLN A:87 , THR A:88 , ALA A:89 , SER A:90 , GLY A:91 , LYS A:92 , THR A:93 , TYR A:94 , MG A:601 , HOH A:617
BINDING SITE FOR RESIDUE ADP A 600
4
AC4
SOFTWARE
ARG B:12 , PRO B:15 , GLN B:87 , THR B:88 , ALA B:89 , SER B:90 , GLY B:91 , LYS B:92 , THR B:93 , TYR B:94 , MG B:702 , HOH B:705
BINDING SITE FOR RESIDUE ADP B 700
5
AC5
SOFTWARE
LYS A:32 , ILE A:134 , ASN A:136 , GLU A:137 , ASN A:259 , ARG A:260 , SER A:261 , ARG A:284 , SER A:286 , LYS A:287
BINDING SITE FOR RESIDUE PIN A 604
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: KINESIN_MOTOR_2 (A:6-329,B:6-329)
2: KINESIN_MOTOR_1 (A:229-240,B:229-240)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
KINESIN_MOTOR_2
PS50067
Kinesin motor domain profile.
CENPE_HUMAN
6-329
2
A:6-329
B:6-329
2
KINESIN_MOTOR_1
PS00411
Kinesin motor domain signature.
CENPE_HUMAN
229-240
2
A:229-240
B:229-240
[
close PROSITE info
]
Exons
(12, 24)
Info
All Exons
Exon 1.1a (A:4-19 | B:5-17)
Exon 1.2 (A:19-50 | B:27-50)
Exon 1.3 (A:50-80 | B:50-80)
Exon 1.4 (A:80-119 | B:80-119)
Exon 1.5 (A:120-159 | B:120-159)
Exon 1.6 (A:160-187 | B:160-187)
Exon 1.7 (A:187-209 | B:187-209)
Exon 1.8b (A:210-231 (gaps) | B:210-231 (gaps...)
Exon 1.9 (A:232-243 | B:232-243)
Exon 1.10 (A:251-278 | B:252-278)
Exon 1.11 (A:278-321 | B:278-321)
Exon 1.12b (A:322-339 | B:322-339)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12b
13: Boundary 1.12b/1.13a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265148
1a
ENSE00001483506
chr4:
104119566-104119421
146
CENPE_HUMAN
1-19
19
2
A:4-19
B:5-17
16
13
1.2
ENST00000265148
2
ENSE00000970081
chr4:
104118007-104117916
92
CENPE_HUMAN
19-50
32
2
A:19-50
B:27-50
32
24
1.3
ENST00000265148
3
ENSE00000970082
chr4:
104117409-104117320
90
CENPE_HUMAN
50-80
31
2
A:50-80
B:50-80
31
31
1.4
ENST00000265148
4
ENSE00000970083
chr4:
104117195-104117077
119
CENPE_HUMAN
80-119
40
2
A:80-119
B:80-119
40
40
1.5
ENST00000265148
5
ENSE00000970084
chr4:
104116390-104116271
120
CENPE_HUMAN
120-159
40
2
A:120-159
B:120-159
40
40
1.6
ENST00000265148
6
ENSE00000970085
chr4:
104115841-104115760
82
CENPE_HUMAN
160-187
28
2
A:160-187
B:160-187
28
28
1.7
ENST00000265148
7
ENSE00000970086
chr4:
104115598-104115531
68
CENPE_HUMAN
187-209
23
2
A:187-209
B:187-209
23
23
1.8b
ENST00000265148
8b
ENSE00000970087
chr4:
104115451-104115386
66
CENPE_HUMAN
210-231
22
2
A:210-231 (gaps)
B:210-231 (gaps)
22
22
1.9
ENST00000265148
9
ENSE00000970088
chr4:
104107018-104106967
52
CENPE_HUMAN
232-249
18
2
A:232-243
B:232-243
12
12
1.10
ENST00000265148
10
ENSE00000970089
chr4:
104104445-104104358
88
CENPE_HUMAN
249-278
30
2
A:251-278
B:252-278
28
27
1.11
ENST00000265148
11
ENSE00000970090
chr4:
104104048-104103919
130
CENPE_HUMAN
278-321
44
2
A:278-321
B:278-321
44
44
1.12b
ENST00000265148
12b
ENSE00000970091
chr4:
104102613-104102494
120
CENPE_HUMAN
322-361
40
2
A:322-339
B:322-339
18
18
1.13a
ENST00000265148
13a
ENSE00000970092
chr4:
104101626-104101468
159
CENPE_HUMAN
362-414
53
0
-
-
1.14
ENST00000265148
14
ENSE00000970093
chr4:
104098203-104098056
148
CENPE_HUMAN
415-464
50
0
-
-
1.15
ENST00000265148
15
ENSE00000801486
chr4:
104097205-104097117
89
CENPE_HUMAN
464-493
30
0
-
-
1.16
ENST00000265148
16
ENSE00000970094
chr4:
104096060-104095893
168
CENPE_HUMAN
494-549
56
0
-
-
1.17
ENST00000265148
17
ENSE00000970095
chr4:
104084710-104084636
75
CENPE_HUMAN
550-574
25
0
-
-
1.18
ENST00000265148
18
ENSE00000970096
chr4:
104084413-104084294
120
CENPE_HUMAN
575-614
40
0
-
-
1.19
ENST00000265148
19
ENSE00000970097
chr4:
104082614-104082492
123
CENPE_HUMAN
615-655
41
0
-
-
1.20
ENST00000265148
20
ENSE00000970098
chr4:
104082408-104082243
166
CENPE_HUMAN
656-711
56
0
-
-
1.21
ENST00000265148
21
ENSE00000970099
chr4:
104081936-104081782
155
CENPE_HUMAN
711-762
52
0
-
-
1.22
ENST00000265148
22
ENSE00000970100
chr4:
104080481-104080167
315
CENPE_HUMAN
763-867
105
0
-
-
1.23
ENST00000265148
23
ENSE00000970101
chr4:
104080043-104079771
273
CENPE_HUMAN
868-958
91
0
-
-
1.24
ENST00000265148
24
ENSE00000970102
chr4:
104079615-104079457
159
CENPE_HUMAN
959-1011
53
0
-
-
1.25
ENST00000265148
25
ENSE00000970103
chr4:
104074407-104074204
204
CENPE_HUMAN
1012-1079
68
0
-
-
1.26b
ENST00000265148
26b
ENSE00000970104
chr4:
104072534-104072376
159
CENPE_HUMAN
1080-1132
53
0
-
-
1.27
ENST00000265148
27
ENSE00000970105
chr4:
104070565-104070275
291
CENPE_HUMAN
1133-1229
97
0
-
-
1.28
ENST00000265148
28
ENSE00000970106
chr4:
104070156-104070001
156
CENPE_HUMAN
1230-1281
52
0
-
-
1.29
ENST00000265148
29
ENSE00000970107
chr4:
104068803-104068513
291
CENPE_HUMAN
1282-1378
97
0
-
-
1.30
ENST00000265148
30
ENSE00000970108
chr4:
104067264-104066986
279
CENPE_HUMAN
1379-1471
93
0
-
-
1.31b
ENST00000265148
31b
ENSE00000970109
chr4:
104066838-104066680
159
CENPE_HUMAN
1472-1524
53
0
-
-
1.32b
ENST00000265148
32b
ENSE00000970110
chr4:
104066491-104066207
285
CENPE_HUMAN
1525-1619
95
0
-
-
1.33
ENST00000265148
33
ENSE00000970111
chr4:
104065775-104065488
288
CENPE_HUMAN
1620-1715
96
0
-
-
1.34
ENST00000265148
34
ENSE00000970112
chr4:
104064563-104064405
159
CENPE_HUMAN
1716-1768
53
0
-
-
1.35
ENST00000265148
35
ENSE00000970113
chr4:
104063065-104062907
159
CENPE_HUMAN
1769-1821
53
0
-
-
1.36
ENST00000265148
36
ENSE00000970114
chr4:
104062261-104061971
291
CENPE_HUMAN
1822-1918
97
0
-
-
1.37
ENST00000265148
37
ENSE00000970115
chr4:
104061571-104061413
159
CENPE_HUMAN
1919-1971
53
0
-
-
1.38
ENST00000265148
38
ENSE00000970116
chr4:
104061236-104060946
291
CENPE_HUMAN
1972-2068
97
0
-
-
1.39b
ENST00000265148
39b
ENSE00000970117
chr4:
104059606-104059508
99
CENPE_HUMAN
2069-2101
33
0
-
-
1.40b
ENST00000265148
40b
ENSE00000970118
chr4:
104057516-104057298
219
CENPE_HUMAN
2102-2174
73
0
-
-
1.41
ENST00000265148
41
ENSE00000970119
chr4:
104055049-104054852
198
CENPE_HUMAN
2175-2240
66
0
-
-
1.42
ENST00000265148
42
ENSE00000970120
chr4:
104054053-104053850
204
CENPE_HUMAN
2241-2308
68
0
-
-
1.43
ENST00000265148
43
ENSE00000970121
chr4:
104044246-104044028
219
CENPE_HUMAN
2309-2381
73
0
-
-
1.44b
ENST00000265148
44b
ENSE00000970122
chr4:
104041490-104041305
186
CENPE_HUMAN
2382-2443
62
0
-
-
1.45a
ENST00000265148
45a
ENSE00000970123
chr4:
104037846-104037734
113
CENPE_HUMAN
2444-2481
38
0
-
-
1.46
ENST00000265148
46
ENSE00000970124
chr4:
104035709-104035612
98
CENPE_HUMAN
2481-2514
34
0
-
-
1.47
ENST00000265148
47
ENSE00000970125
chr4:
104032168-104031985
184
CENPE_HUMAN
2514-2575
62
0
-
-
1.48
ENST00000265148
48
ENSE00000970126
chr4:
104030246-104029960
287
CENPE_HUMAN
2575-2671
97
0
-
-
1.49b
ENST00000265148
49b
ENSE00001193410
chr4:
104027473-104026963
511
CENPE_HUMAN
2671-2701
31
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1t5ca_ (A:)
1b: SCOP_d1t5cb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
1a
d1t5ca_
A:
1b
d1t5cb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1t5cA00 (A:4-339)
1b: CATH_1t5cB00 (B:5-339)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Kinesin
(69)
Homologous Superfamily
:
Kinesin
(69)
Human (Homo sapiens)
(36)
1a
1t5cA00
A:4-339
1b
1t5cB00
B:5-339
[
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Pfam Domains
(0, 0)
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