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1T4S
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (147 KB)
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(1)
Title
:
ARGINASE-L-VALINE COMPLEX
Authors
:
E. Cama, S. Pethe, J. -L. Boucher, H. Shoufa, F. A. Emig, D. E. Ash, R. E. Viola, D. Mansuy, D. W. Christianson
Date
:
30 Apr 04 (Deposition) - 12 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Arginase, L-Valine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Cama, S. Pethe, J. -L. Boucher, S. Han, F. A. Emig, D. E. Ash, R. E. Viola, D. Mansuy, D. W. Christianson
Inhibitor Coordination Interactions In The Binuclear Manganese Cluster Of Arginase
Biochemistry V. 43 8987 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
1e: MANGANESE (II) ION (MNe)
1f: MANGANESE (II) ION (MNf)
2a: VALINE (VALa)
2b: VALINE (VALb)
2c: VALINE (VALc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
6
Ligand/Ion
MANGANESE (II) ION
2
VAL
3
Mod. Amino Acid
VALINE
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:124 , HIS A:126 , ASP A:232 , ASP A:234 , MN A:501 , HOH A:729
BINDING SITE FOR RESIDUE MN A 500
2
AC2
SOFTWARE
HIS A:101 , ASP A:124 , ASP A:128 , ASP A:232 , MN A:500 , HOH A:729
BINDING SITE FOR RESIDUE MN A 501
3
AC3
SOFTWARE
ASP B:124 , HIS B:126 , ASP B:232 , ASP B:234 , MN B:503 , HOH B:730
BINDING SITE FOR RESIDUE MN B 502
4
AC4
SOFTWARE
HIS B:101 , ASP B:124 , ASP B:128 , ASP B:232 , MN B:502 , HOH B:730
BINDING SITE FOR RESIDUE MN B 503
5
AC5
SOFTWARE
ASP C:124 , HIS C:126 , ASP C:232 , ASP C:234 , MN C:505 , HOH C:728
BINDING SITE FOR RESIDUE MN C 504
6
AC6
SOFTWARE
HIS C:101 , ASP C:124 , ASP C:128 , ASP C:232 , MN C:504 , HOH C:728
BINDING SITE FOR RESIDUE MN C 505
7
AC7
SOFTWARE
HIS A:126 , ASN A:130 , SER A:137 , HIS A:141 , ASP A:183 , GLU A:186 , HOH A:708 , HOH A:711
BINDING SITE FOR RESIDUE VAL A 1000
8
AC8
SOFTWARE
HIS B:126 , ASN B:130 , SER B:137 , HIS B:141 , ASP B:183 , GLU B:186 , HOH B:709 , HOH B:712
BINDING SITE FOR RESIDUE VAL B 1001
9
AC9
SOFTWARE
HIS C:126 , ASN C:130 , SER C:137 , HIS C:141 , ASP C:183 , GLU C:186 , HOH C:710 , HOH C:713
BINDING SITE FOR RESIDUE VAL C 1002
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 3)
Info
All PROSITE Patterns/Profiles
1: ARGINASE_1 (A:230-251,B:230-251,C:230-251)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARGINASE_1
PS01053
Arginase family signature.
ARGI1_RAT
230-251
3
A:230-251
B:230-251
C:230-251
[
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]
Exons
(8, 24)
Info
All Exons
Exon 1.1 (A:6-19 | B:6-19 | C:6-19)
Exon 1.2 (A:20-44 | B:20-44 | C:20-44)
Exon 1.3 (A:44-102 | B:44-102 | C:44-102)
Exon 1.4 (A:102-155 | B:102-155 | C:102-155)
Exon 1.5 (A:156-187 | B:156-187 | C:156-187)
Exon 1.6 (A:187-222 | B:187-222 | C:187-222)
Exon 1.7 (A:222-268 | B:222-268 | C:222-268)
Exon 1.8 (A:268-319 | B:268-319 | C:268-319)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/1.8
9: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000017911
1
ENSRNOE00000127362
chr1:
20998894-20999025
132
ARGI1_RAT
1-19
19
3
A:6-19
B:6-19
C:6-19
14
14
14
1.2
ENSRNOT00000017911
2
ENSRNOE00000127505
chr1:
21003810-21003882
73
ARGI1_RAT
20-44
25
3
A:20-44
B:20-44
C:20-44
25
25
25
1.3
ENSRNOT00000017911
3
ENSRNOE00000127596
chr1:
21005814-21005988
175
ARGI1_RAT
44-102
59
3
A:44-102
B:44-102
C:44-102
59
59
59
1.4
ENSRNOT00000017911
4
ENSRNOE00000126918
chr1:
21008032-21008191
160
ARGI1_RAT
102-155
54
3
A:102-155
B:102-155
C:102-155
54
54
54
1.5
ENSRNOT00000017911
5
ENSRNOE00000126971
chr1:
21009513-21009607
95
ARGI1_RAT
156-187
32
3
A:156-187
B:156-187
C:156-187
32
32
32
1.6
ENSRNOT00000017911
6
ENSRNOE00000127033
chr1:
21010045-21010149
105
ARGI1_RAT
187-222
36
3
A:187-222
B:187-222
C:187-222
36
36
36
1.7
ENSRNOT00000017911
7
ENSRNOE00000127086
chr1:
21010337-21010473
137
ARGI1_RAT
222-268
47
3
A:222-268
B:222-268
C:222-268
47
47
47
1.8
ENSRNOT00000017911
8
ENSRNOE00000127695
chr1:
21010716-21011266
551
ARGI1_RAT
268-323
56
3
A:268-319
B:268-319
C:268-319
52
52
52
[
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]
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d1t4sa_ (A:)
1b: SCOP_d1t4sb_ (B:)
1c: SCOP_d1t4sc_ (C:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Arginase/deacetylase
(138)
Superfamily
:
Arginase/deacetylase
(138)
Family
:
Arginase-like amidino hydrolases
(97)
Protein domain
:
Arginase
(73)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(34)
1a
d1t4sa_
A:
1b
d1t4sb_
B:
1c
d1t4sc_
C:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1t4sA00 (A:6-319)
1b: CATH_1t4sB00 (B:6-319)
1c: CATH_1t4sC00 (C:6-319)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Arginase; Chain A
(84)
Homologous Superfamily
:
[code=3.40.800.10, no name defined]
(63)
Norway rat (Rattus norvegicus)
(31)
1a
1t4sA00
A:6-319
1b
1t4sB00
B:6-319
1c
1t4sC00
C:6-319
[
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Pfam Domains
(1, 3)
Info
all PFAM domains
1a: PFAM_Arginase_1t4sC01 (C:6-305)
1b: PFAM_Arginase_1t4sC02 (C:6-305)
1c: PFAM_Arginase_1t4sC03 (C:6-305)
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)
Clan
:
Arginase
(56)
Family
:
Arginase
(37)
Rattus norvegicus (Rat)
(19)
1a
Arginase-1t4sC01
C:6-305
1b
Arginase-1t4sC02
C:6-305
1c
Arginase-1t4sC03
C:6-305
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