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1T47
Asym. Unit
Info
Asym.Unit (123 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
STRUCTURE OF FE2-HPPD BOUND TO NTBC
Authors
:
J. Brownlee, K. Johnson-Winters, D. H. T. Harrison, G. R. Moran
Date
:
28 Apr 04 (Deposition) - 15 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Triketone Inhibitor, Dioxygenase, Iron, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Brownlee, K. Johnson-Winters, D. H. T. Harrison, G. R. Moran
Structure Of The Ferrous Form Of (4-Hydroxyphenyl)Pyruvate Dioxygenase From Streptomyces Avermitilis In Complex With The Therapeutic Herbicide, Ntbc
Biochemistry V. 43 6370 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
2a: 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMET... (NTDa)
2b: 2-{HYDROXY[2-NITRO-4-(TRIFLUOROMET... (NTDb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
FE2
2
Ligand/Ion
FE (II) ION
2
NTD
2
Ligand/Ion
2-{HYDROXY[2-NITRO-4-(TRIFLUOROMETHYL)PHENYL]METHYLENE}CYCLOHEXANE-1,3-DIONE
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Sites
(4, 4)
Info
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS B:187 , HIS B:270 , GLU B:349 , NTD B:550 , HOH B:874
BINDING SITE FOR RESIDUE FE2 B 430
2
AC2
SOFTWARE
HIS A:187 , HIS A:270 , GLU A:349 , NTD A:551
BINDING SITE FOR RESIDUE FE2 A 431
3
AC3
SOFTWARE
HIS A:187 , SER A:230 , PRO A:243 , ASN A:245 , HIS A:270 , LEU A:323 , PHE A:336 , PHE A:347 , GLU A:349 , PHE A:359 , GLY A:360 , ASN A:363 , PHE A:364 , LEU A:367 , FE2 A:431
BINDING SITE FOR RESIDUE NTD A 551
4
AC4
SOFTWARE
HIS B:187 , SER B:230 , PRO B:243 , ASN B:245 , HIS B:270 , LEU B:323 , PHE B:336 , PHE B:347 , GLU B:349 , PHE B:359 , GLY B:360 , ASN B:363 , PHE B:364 , LEU B:367 , FE2 B:430
BINDING SITE FOR RESIDUE NTD B 550
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: VOC (A:22-156,B:22-156|A:184-338,B:184-...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VOC
PS51819
Vicinal oxygen chelate (VOC) domain profile.
HPPD_STRAW
22-156
184-338
4
A:22-156
B:22-156
A:184-338
B:184-338
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1t47a1 (A:16-178)
1b: SCOP_d1t47a2 (A:179-377)
1c: SCOP_d1t47b1 (B:16-178)
1d: SCOP_d1t47b2 (B:179-377)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Superfamily
:
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
(136)
Family
:
Extradiol dioxygenases
(43)
Protein domain
:
4-hydroxyphenylpyruvate dioxygenase, HppD
(9)
Streptomyces avermitilis [TaxId: 33903]
(1)
1a
d1t47a1
A:16-178
1b
d1t47a2
A:179-377
1c
d1t47b1
B:16-178
1d
d1t47b2
B:179-377
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1t47A01 (A:16-178)
1b: CATH_1t47B01 (B:16-178)
1c: CATH_1t47A02 (A:179-377)
1d: CATH_1t47B02 (B:179-377)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1
(113)
Homologous Superfamily
:
2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1
(106)
Streptomyces avermitilis. Organism_taxid: 33903.
(1)
1a
1t47A01
A:16-178
1b
1t47B01
B:16-178
1c
1t47A02
A:179-377
1d
1t47B02
B:179-377
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Glyoxalase_1t47B01 (B:184-335)
1b: PFAM_Glyoxalase_1t47B02 (B:184-335)
2a: PFAM_Glyoxalase_2_1t47B03 (B:28-147)
2b: PFAM_Glyoxalase_2_1t47B04 (B:28-147)
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Clan
:
Glyoxalase
(58)
Family
:
Glyoxalase
(34)
Streptomyces avermitilis
(1)
1a
Glyoxalase-1t47B01
B:184-335
1b
Glyoxalase-1t47B02
B:184-335
Family
:
Glyoxalase_2
(17)
Streptomyces avermitilis
(1)
2a
Glyoxalase_2-1t47B03
B:28-147
2b
Glyoxalase_2-1t47B04
B:28-147
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Asymmetric Unit 1
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Asym.Unit (123 KB)
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