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1T3T
Asym. Unit
Info
Asym.Unit (230 KB)
Biol.Unit 1 (224 KB)
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(1)
Title
:
STRUCTURE OF FORMYLGLYCINAMIDE SYNTHETASE
Authors
:
S. E. Ealick, R. Anand, A. A. Hoskin, J. Stubbe
Date
:
27 Apr 04 (Deposition) - 14 Sep 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Purl, Fgam Synthetase, Purs, Purq, Formyl Glycinamide, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Anand, A. A. Hoskin, J. Stubbe, S. E. Ealick
Domain Organization Of Salmonella Typhimurium Formylglycinamide Ribonucleotide Amidotransferase Revealed By X-Ray Crystallography
Biochemistry V. 43 10328 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: 2-AMINO-4-(AMINO-3-OXO-PROPYLSULFA... (CYGa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
CYG
1
Mod. Amino Acid
2-AMINO-4-(AMINO-3-OXO-PROPYLSULFANYLCARBONYL)-BUTYRIC ACID
3
MG
3
Ligand/Ion
MAGNESIUM ION
4
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:679 , ASN A:722 , ASP A:884 , ADP A:2005 , HOH A:3086 , HOH A:3089
BINDING SITE FOR RESIDUE MG A 2006
02
AC2
SOFTWARE
GLU A:718 , ADP A:2005 , HOH A:2023 , HOH A:2054 , HOH A:3090 , HOH A:3091
BINDING SITE FOR RESIDUE MG A 2007
03
AC3
SOFTWARE
ADP A:2005 , HOH A:2041 , HOH A:3085 , HOH A:3087 , HOH A:3088
BINDING SITE FOR RESIDUE MG A 2008
04
AC4
SOFTWARE
HIS A:216 , GLU A:294 , GLY A:504 , ALA A:505 , LYS A:776 , HOH A:2608
BINDING SITE FOR RESIDUE SO4 A 2001
05
AC5
SOFTWARE
HIS A:216 , THR A:295 , HIS A:296 , ASN A:297 , HIS A:298 , SER A:778 , HOH A:2261 , HOH A:2269 , HOH A:2362 , HOH A:2733 , HOH A:2914
BINDING SITE FOR RESIDUE SO4 A 2002
06
AC6
SOFTWARE
TYR A:690 , ARG A:812 , LYS A:1228 , VAL A:1229 , HOH A:2066 , HOH A:2527 , HOH A:2765 , HOH A:2963
BINDING SITE FOR RESIDUE SO4 A 2009
07
AC7
SOFTWARE
GLN A:1176 , GLN A:1183 , GLY A:1184 , MET A:1185 , VAL A:1186 , HOH A:2245 , HOH A:2252 , HOH A:2785 , HOH A:3012
BINDING SITE FOR RESIDUE SO4 A 2010
08
AC8
SOFTWARE
PRO A:1040 , LYS A:1041 , HIS A:1086 , HOH A:2274 , HOH A:2415 , HOH A:2621 , HOH A:2704 , HOH A:2836
BINDING SITE FOR RESIDUE SO4 A 2011
09
AC9
SOFTWARE
HIS A:1086 , ARG A:1126 , PRO A:1127 , GLN A:1128 , THR A:1129 , HOH A:2244 , HOH A:2250 , HOH A:2792 , HOH A:2974
BINDING SITE FOR RESIDUE SO4 A 2012
10
BC1
SOFTWARE
THR A:386 , GLY A:387 , TYR A:388 , PHE A:389 , LEU A:652 , GLN A:668 , PRO A:676 , ALA A:678 , ASP A:679 , GLU A:718 , ASN A:722 , SER A:886 , MG A:2006 , MG A:2007 , MG A:2008 , HOH A:2023 , HOH A:2041 , HOH A:2061 , HOH A:2093 , HOH A:2140 , HOH A:2156 , HOH A:2265 , HOH A:2381 , HOH A:2682 , HOH A:3090 , HOH A:3091
BINDING SITE FOR RESIDUE ADP A 2005
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(5, 7)
Info
All SCOP Domains
1a: SCOP_d1t3ta1 (A:153-220)
2a: SCOP_d1t3ta4 (A:221-429)
2b: SCOP_d1t3ta5 (A:617-816)
3a: SCOP_d1t3ta6 (A:430-616)
3b: SCOP_d1t3ta7 (A:817-1033)
4a: SCOP_d1t3ta3 (A:1-152)
5a: SCOP_d1t3ta2 (A:1034-1295)
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Classes
(
)
(
)
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(
)
(
)
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(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
RuvA C-terminal domain-like
(106)
Superfamily
:
FGAM synthase PurL, linker domain
(4)
Family
:
FGAM synthase PurL, linker domain
(4)
Protein domain
:
FGAM synthase PurL, linker domain
(4)
Salmonella typhimurium [TaxId: 90371]
(1)
1a
d1t3ta1
A:153-220
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Bacillus chorismate mutase-like
(324)
Superfamily
:
PurM N-terminal domain-like
(31)
Family
:
PurM N-terminal domain-like
(25)
Protein domain
:
FGAM synthase PurL, PurM-like module, N1 and N2 domains
(4)
Salmonella typhimurium [TaxId: 90371]
(1)
2a
d1t3ta4
A:221-429
2b
d1t3ta5
A:617-816
Fold
:
PurM C-terminal domain-like
(31)
Superfamily
:
PurM C-terminal domain-like
(31)
Family
:
PurM C-terminal domain-like
(24)
Protein domain
:
FGAM synthase PurL, PurM-like module, C1 and C2 domains
(4)
Salmonella typhimurium [TaxId: 90371]
(1)
3a
d1t3ta6
A:430-616
3b
d1t3ta7
A:817-1033
Fold
:
PurS-like
(10)
Superfamily
:
PurS-like
(10)
Family
:
FGAM synthase PurL, PurS-like domain
(4)
Protein domain
:
FGAM synthase PurL, PurS-like domain
(4)
Salmonella typhimurium [TaxId: 90371]
(1)
4a
d1t3ta3
A:1-152
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Class I glutamine amidotransferase-like
(173)
Family
:
Class I glutamine amidotransferases (GAT)
(48)
Protein domain
:
FGAM synthase PurL, amidotransferase domain
(4)
Salmonella typhimurium [TaxId: 90371]
(1)
5a
d1t3ta2
A:1034-1295
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_GATase_5_1t3tA01 (A:1039-1293)
2a: PFAM_AIRS_1t3tA02 (A:257-389)
3a: PFAM_AIRS_C_1t3tA03 (A:821-969)
3b: PFAM_AIRS_C_1t3tA04 (A:821-969)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Glutaminase_I
(73)
Family
:
GATase_5
(1)
Salmonella typhimurium
(1)
1a
GATase_5-1t3tA01
A:1039-1293
Clan
:
no clan defined [family: AIRS]
(11)
Family
:
AIRS
(11)
Salmonella typhimurium
(1)
2a
AIRS-1t3tA02
A:257-389
Clan
:
no clan defined [family: AIRS_C]
(13)
Family
:
AIRS_C
(13)
Salmonella typhimurium
(1)
3a
AIRS_C-1t3tA03
A:821-969
3b
AIRS_C-1t3tA04
A:821-969
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Chain A
Asymmetric Unit 1
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Asym.Unit (230 KB)
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