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1T3E
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (128 KB)
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(1)
Title
:
STRUCTURAL BASIS OF DYNAMIC GLYCINE RECEPTOR CLUSTERING
Authors
:
M. Sola, V. N. Bavro, J. Timmins, T. Franz, S. Ricard-Blum, G. Schoehn, R. W. H. Ruigrok, I. Paarmann, T. Saiyed, G. A. O'Sullivan
Date
:
26 Apr 04 (Deposition) - 27 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.25
Chains
:
Asym. Unit : A,B,P
Biol. Unit 1: A,B,P (1x)
Keywords
:
Alfa-Beta, Structural Protein-Signaling Protein Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Sola, V. N. Bavro, J. Timmins, T. Franz, S. Ricard-Blum, G. Schoehn, R. W. H. Ruigrok, I. Paarmann, T. Saiyed, G. A. O'Sullivan, B. Schmitt, H. Betz, W. Weissenhorn
Structural Basis Of Dynamic Glycine Receptor Clustering By Gephyrin
Embo J. V. 23 2510 2004
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
1f: SULFATE ION (SO4f)
1g: SULFATE ION (SO4g)
1h: SULFATE ION (SO4h)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
SO4
8
Ligand/Ion
SULFATE ION
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:541 , ASN A:543 , SO4 B:3 , ARG B:348
BINDING SITE FOR RESIDUE SO4 B 1
2
AC2
SOFTWARE
ARG A:434 , LYS B:465
BINDING SITE FOR RESIDUE SO4 A 2
3
AC3
SOFTWARE
ASN A:512 , ARG A:527 , ASN A:543 , SO4 B:1 , TYR B:347 , ARG B:348
BINDING SITE FOR RESIDUE SO4 B 3
4
AC4
SOFTWARE
SO4 A:8 , TYR A:347 , ARG A:348 , ASN B:512 , GLU B:514 , ARG B:527 , ASN B:543
BINDING SITE FOR RESIDUE SO4 B 4
5
AC5
SOFTWARE
LYS B:602 , PRO B:603 , GLY B:604 , LEU B:605 , ARG B:670
BINDING SITE FOR RESIDUE SO4 B 5
6
AC6
SOFTWARE
HIS A:476 , ARG A:644
BINDING SITE FOR RESIDUE SO4 A 6
7
AC7
SOFTWARE
LYS A:602 , PRO A:603 , GLY A:604 , LEU A:605 , ARG A:670
BINDING SITE FOR RESIDUE SO4 A 7
8
AC8
SOFTWARE
ARG A:348 , SO4 B:4 , ASN B:543
BINDING SITE FOR RESIDUE SO4 A 8
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MOCF_BIOSYNTHESIS_2 (A:580-610,B:575-610)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOCF_BIOSYNTHESIS_2
PS01079
Molybdenum cofactor biosynthesis proteins signature 2.
GEPH_RAT
607-642
2
A:580-610
B:575-610
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Exons
(1, 1)
Info
All Exons
Exon 1.9 (P:301-305)
View:
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Label:
All Exon Boundaries
1: Boundary 1.8/1.9
2: Boundary 1.9/1.10
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000014170
1
ENSRNOE00000097211
chr2:
172522841-172522720
122
GLRB_RAT
1-41
41
0
-
-
1.3
ENSRNOT00000014170
3
ENSRNOE00000097413
chr2:
172486897-172486791
107
GLRB_RAT
41-77
37
0
-
-
1.4
ENSRNOT00000014170
4
ENSRNOE00000097628
chr2:
172485252-172485185
68
GLRB_RAT
77-99
23
0
-
-
1.5
ENSRNOT00000014170
5
ENSRNOE00000097860
chr2:
172468434-172468205
230
GLRB_RAT
100-176
77
0
-
-
1.6
ENSRNOT00000014170
6
ENSRNOE00000098190
chr2:
172468098-172468016
83
GLRB_RAT
176-204
29
0
-
-
1.7
ENSRNOT00000014170
7
ENSRNOE00000098448
chr2:
172466252-172466112
141
GLRB_RAT
204-251
48
0
-
-
1.8
ENSRNOT00000014170
8
ENSRNOE00000096350
chr2:
172462231-172462079
153
GLRB_RAT
251-302
52
0
-
-
1.9
ENSRNOT00000014170
9
ENSRNOE00000096452
chr2:
172457693-172457401
293
GLRB_RAT
302-399
98
1
P:301-305
5
1.10
ENSRNOT00000014170
10
ENSRNOE00000098819
chr2:
172452100-172451807
294
GLRB_RAT
400-496
97
0
-
-
[
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SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1t3ea1 (A:654-736)
1b: SCOP_d1t3eb1 (B:654-736)
2a: SCOP_d1t3ea2 (A:318-498)
2b: SCOP_d1t3eb2 (B:318-498)
3a: SCOP_d1t3ea3 (A:499-653)
3b: SCOP_d1t3eb3 (B:499-653)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
MoeA C-terminal domain-like
(20)
Family
:
MoeA C-terminal domain-like
(20)
Protein domain
:
Gephyrin, C-terminal domain
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1t3ea1
A:654-736
1b
d1t3eb1
B:654-736
Fold
:
MoeA N-terminal region -like
(20)
Superfamily
:
MoeA N-terminal region -like
(20)
Family
:
MoeA N-terminal region -like
(20)
Protein domain
:
Gephyrin, domains 3 and 4
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
2a
d1t3ea2
A:318-498
2b
d1t3eb2
B:318-498
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Molybdenum cofactor biosynthesis proteins
(49)
Superfamily
:
Molybdenum cofactor biosynthesis proteins
(49)
Family
:
MoeA central domain-like
(20)
Protein domain
:
Gephyrin, domain 5
(3)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
3a
d1t3ea3
A:499-653
3b
d1t3eb3
B:499-653
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CATH Domains
(4, 8)
Info
all CATH domains
1a: CATH_1t3eA01 (A:318-341,A:498-655)
1b: CATH_1t3eB01 (B:318-341,B:498-655)
2a: CATH_1t3eA02 (A:342-365,A:464-497)
2b: CATH_1t3eB02 (B:342-365,B:464-497)
3a: CATH_1t3eA04 (A:656-736)
3b: CATH_1t3eB04 (B:656-736)
4a: CATH_1t3eA03 (A:366-463)
4b: CATH_1t3eB03 (B:366-463)
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Homologous Superfamily
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Norway rat (Rattus norvegicus)
(4)
1a
1t3eA01
A:318-341,A:498-655
1b
1t3eB01
B:318-341,B:498-655
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Norway rat (Rattus norvegicus)
(3)
2a
1t3eA02
A:342-365,A:464-497
2b
1t3eB02
B:342-365,B:464-497
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Beta-clip
(16)
Homologous Superfamily
:
MoeA C-terminal domain-like
(16)
Norway rat (Rattus norvegicus)
(3)
3a
1t3eA04
A:656-736
3b
1t3eB04
B:656-736
Architecture
:
Beta Complex
(381)
Topology
:
Molybdopterin biosynthesis moeA protein; domain 3
(15)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 3.
(15)
Norway rat (Rattus norvegicus)
(3)
4a
1t3eA03
A:366-463
4b
1t3eB03
B:366-463
[
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]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_MoCF_biosynth_1t3eB01 (B:502-645)
1b: PFAM_MoCF_biosynth_1t3eB02 (B:502-645)
2a: PFAM_MoeA_C_1t3eB03 (B:658-733)
2b: PFAM_MoeA_C_1t3eB04 (B:658-733)
3a: PFAM_MoeA_N_1t3eB05 (B:323-489)
3b: PFAM_MoeA_N_1t3eB06 (B:323-489)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MoCF_biosynth]
(31)
Family
:
MoCF_biosynth
(31)
Rattus norvegicus (Rat)
(1)
1a
MoCF_biosynth-1t3eB01
B:502-645
1b
MoCF_biosynth-1t3eB02
B:502-645
Clan
:
no clan defined [family: MoeA_C]
(15)
Family
:
MoeA_C
(15)
Rattus norvegicus (Rat)
(1)
2a
MoeA_C-1t3eB03
B:658-733
2b
MoeA_C-1t3eB04
B:658-733
Clan
:
no clan defined [family: MoeA_N]
(15)
Family
:
MoeA_N
(15)
Rattus norvegicus (Rat)
(1)
3a
MoeA_N-1t3eB05
B:323-489
3b
MoeA_N-1t3eB06
B:323-489
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Asym.Unit (136 KB)
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