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1T2Z
Theor. Model
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Theoretical Model (23 KB)
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Title
:
HUMAN MD-2 MODEL
Authors
:
A. Gruber, M. Mancek, H. Wagner, C. J. Kirschning, R. Jerala
Date
:
23 Apr 04 (Deposition) - 22 Jun 04 (Release) - 06 Jul 04 (Revision)
Method
:
THEORETICAL MODEL
Resolution
:
NOT APPLICABLE
Chains
:
Theor. Model : A
Keywords
:
Md-2, Toll-Like Receptor 4 (Tlr4), Pattern Recognition Receptor (Prr), Lipopolysaccharide (Lps), Comparative Modeling
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Gruber, M. Mancek, H. Wagner, C. J. Kirschning, R. Jerala
Structural Model Of Md-2 And Functional Role Of Its Basic Amino Acid Clusters Involved In Cellular Lipopolysaccharide Recognition
J. Biol. Chem. V. 279 28475 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050030 (G56G, chain A, )
2: VAR_024532 (P157S, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050030
R
56
G
LY96_HUMAN
Polymorphism
6472812
A
G
56
G
2
UniProt
VAR_024532
P
157
S
LY96_HUMAN
Polymorphism
11466004
A
P
157
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:19-38)
Exon 1.2 (A:38-68)
Exon 1.3 (A:68-111)
Exon 1.4 (A:111-128)
Exon 1.5b (A:129-160)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284818
1a
ENSE00001244306
chr8:
74903587-74903789
203
LY96_HUMAN
1-38
38
1
A:19-38
20
1.2
ENST00000284818
2
ENSE00001016737
chr8:
74917031-74917120
90
LY96_HUMAN
38-68
31
1
A:38-68
31
1.3
ENST00000284818
3
ENSE00001016736
chr8:
74922236-74922364
129
LY96_HUMAN
68-111
44
1
A:68-111
44
1.4
ENST00000284818
4
ENSE00001016734
chr8:
74939024-74939076
53
LY96_HUMAN
111-128
18
1
A:111-128
18
1.5b
ENST00000284818
5b
ENSE00002121776
chr8:
74941191-74941322
132
LY96_HUMAN
129-160
32
1
A:129-160
32
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Chain A
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