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1T27
Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
THE STRUCTURE OF PITP COMPLEXED TO PHOSPHATIDYLCHOLINE
Authors
:
M. D. Yoder, L. M. Thomas, J. M. Tremblay, R. L. Oliver, L. R. Yarbrough, G. M. Helmkamp Jr.
Date
:
20 Apr 04 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Lipid Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. D. Yoder, L. M. Thomas, J. M. Tremblay, R. L. Oliver, L. R. Yarbrough, G. M. Helmkamp Jr.
Structure Of A Multifunctional Protein. Mammalian Phosphatidylinositol Transfer Protein Complexed With Phosphatidylcholine
J. Biol. Chem. V. 276 9246 2001
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOC... (PCWa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PCW
1
Ligand/Ion
1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:22 , TYR A:63 , LYS A:68 , ALA A:77 , LEU A:82 , GLU A:86 , ASN A:90 , THR A:97 , ILE A:99 , ASN A:101 , TYR A:103 , MET A:104 , LYS A:195 , TRP A:203 , PHE A:213 , GLN A:217 , GLU A:218 , PHE A:222 , MET A:267 , ASP A:270 , HOH A:503 , HOH A:628
BINDING SITE FOR RESIDUE PCW A 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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;
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End label:
Sorry, no Info available
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Exons
(11, 11)
Info
All Exons
Exon 1.1 (A:2-7)
Exon 1.2 (A:7-17)
Exon 1.3 (A:18-67)
Exon 1.4 (A:67-98)
Exon 1.5 (A:98-100)
Exon 1.6 (A:101-125)
Exon 1.7 (A:126-153)
Exon 1.8 (A:154-179)
Exon 1.9 (A:180-216)
Exon 1.10 (A:217-257)
Exon 1.11 (A:258-270)
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All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000005368
1
ENSRNOE00000301382
chr10:
62908505-62908744
240
PIPNA_RAT
1-7
7
1
A:2-7
6
1.2
ENSRNOT00000005368
2
ENSRNOE00000036186
chr10:
62912614-62912644
31
PIPNA_RAT
7-17
11
1
A:7-17
11
1.3
ENSRNOT00000005368
3
ENSRNOE00000005377
chr10:
62918568-62918716
149
PIPNA_RAT
18-67
50
1
A:18-67
50
1.4
ENSRNOT00000005368
4
ENSRNOE00000036270
chr10:
62923824-62923915
92
PIPNA_RAT
67-98
32
1
A:67-98
32
1.5
ENSRNOT00000005368
5
ENSRNOE00000449321
chr10:
62929241-62929248
8
PIPNA_RAT
98-100
3
1
A:98-100
3
1.6
ENSRNOT00000005368
6
ENSRNOE00000036332
chr10:
62930193-62930267
75
PIPNA_RAT
101-125
25
1
A:101-125
25
1.7
ENSRNOT00000005368
7
ENSRNOE00000036398
chr10:
62933121-62933204
84
PIPNA_RAT
126-153
28
1
A:126-153
28
1.8
ENSRNOT00000005368
8
ENSRNOE00000036510
chr10:
62939297-62939374
78
PIPNA_RAT
154-179
26
1
A:154-179
26
1.9
ENSRNOT00000005368
9
ENSRNOE00000036593
chr10:
62939501-62939611
111
PIPNA_RAT
180-216
37
1
A:180-216
37
1.10
ENSRNOT00000005368
10
ENSRNOE00000036701
chr10:
62940320-62940442
123
PIPNA_RAT
217-257
41
1
A:217-257
41
1.11
ENSRNOT00000005368
11
ENSRNOE00000036791
chr10:
62946145-62946210
66
PIPNA_RAT
258-271
14
1
A:258-270
13
1.12
ENSRNOT00000005368
12
ENSRNOE00000297107
chr10:
62948248-62948856
609
PIPNA_RAT
-
0
0
-
-
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1t27a_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
Phoshatidylinositol transfer protein, PITP
(4)
Protein domain
:
Phoshatidylinositol transfer protein, PITP
(4)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d1t27a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1t27A00 (A:2-270)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4
(47)
Homologous Superfamily
:
[code=3.30.530.20, no name defined]
(47)
Norway rat (Rattus norvegicus)
(2)
1a
1t27A00
A:2-270
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_IP_trans_1t27A01 (A:2-255)
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Clan
:
Bet_V_1_like
(93)
Family
:
IP_trans
(3)
Rattus norvegicus (Rat)
(1)
1a
IP_trans-1t27A01
A:2-255
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