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1T0S
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (309 KB)
Biol.Unit 2 (157 KB)
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(1)
Title
:
STRUCTURE OF THE TOLUENE/O-XYLENE MONOOXYGENASE HYDROXYLASE WITH 4-BROMOPHENOL BOUND
Authors
:
M. H. Sazinsky, J. Bard, A. Di Donato, S. J. Lippard
Date
:
12 Apr 04 (Deposition) - 27 Jul 04 (Release) - 16 Nov 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (2x)
Biol. Unit 2: A,B,C (1x)
Keywords
:
Diiron, 4-Bromophenol, Channel, 4-Helix Bundle, Carboxylate Bridge, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
M. H. Sazinsky, J. Bard, A. Di Donato, S. J. Lippard
Crystal Structure Of The Toluene/O-Xylene Monooxygenase Hydroxylase From Pseudomonas Stutzeri Ox1: Insight Into The Substrate Specificity, Substrate Channeling, And Active Sit Tuning Of Multicomponent Monooxygenases.
J. Biol. Chem. V. 279 30600 2004
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: 4-BROMOPHENOL (BMLa)
1b: 4-BROMOPHENOL (BMLb)
1c: 4-BROMOPHENOL (BMLc)
1d: 4-BROMOPHENOL (BMLd)
1e: 4-BROMOPHENOL (BMLe)
1f: 4-BROMOPHENOL (BMLf)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
3a: SULFANYLACETIC ACID (MCRa)
4a: HYDROXIDE ION (OHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BML
6
Ligand/Ion
4-BROMOPHENOL
2
FE
2
Ligand/Ion
FE (III) ION
3
MCR
1
Ligand/Ion
SULFANYLACETIC ACID
4
OH
1
Ligand/Ion
HYDROXIDE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:134 , GLU A:197 , GLU A:231 , HIS A:234 , FE A:500 , OH A:501 , MCR A:502
BINDING SITE FOR RESIDUE FE A 499
02
AC2
SOFTWARE
GLU A:104 , GLU A:134 , HIS A:137 , FE A:499 , OH A:501 , MCR A:502 , HOH A:507
BINDING SITE FOR RESIDUE FE A 500
03
AC3
SOFTWARE
GLU A:134 , HIS A:137 , GLU A:197 , GLU A:231 , HIS A:234 , FE A:499 , FE A:500 , MCR A:502 , HOH A:507
BINDING SITE FOR RESIDUE OH A 501
04
AC4
SOFTWARE
GLU A:104 , GLU A:134 , PHE A:176 , GLU A:197 , FE A:499 , FE A:500 , OH A:501
BINDING SITE FOR RESIDUE MCR A 502
05
AC5
SOFTWARE
HIS A:96 , ILE A:100 , GLN A:204 , LEU A:272 , THR A:273
BINDING SITE FOR RESIDUE BML A 503
06
AC6
SOFTWARE
GLY A:207 , ASP A:211 , THR A:273 , MET A:277
BINDING SITE FOR RESIDUE BML A 504
07
AC7
SOFTWARE
TRP A:89 , THR A:92 , ASP A:211 , ALA A:215 , TYR A:280 , THR A:281 , PRO A:282
BINDING SITE FOR RESIDUE BML A 505
08
AC8
SOFTWARE
PRO A:56 , GLU B:94 , PHE B:101 , HIS B:168
BINDING SITE FOR RESIDUE BML B 331
09
AC9
SOFTWARE
GLU A:391 , LEU A:393 , ASP A:463 , LEU A:464
BINDING SITE FOR RESIDUE BML A 506
10
BC1
SOFTWARE
GLU B:231 , GLU B:232 , LYS B:258 , GLU B:262 , ARG B:265 , HOH B:469
BINDING SITE FOR RESIDUE BML B 332
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d1t0sa_ (A:)
2a: SCOP_d1t0sb_ (B:)
3a: SCOP_d1t0sc_ (C:)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Ferritin-like
(489)
Family
:
Ribonucleotide reductase-like
(185)
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouA
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
1a
d1t0sa_
A:
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouE
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
2a
d1t0sb_
B:
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
TmoB-like
(31)
Family
:
TmoB-like
(17)
Protein domain
:
Toluene, o-xylene monooxygenase oxygenase subunit TouB
(17)
Pseudomonas stutzeri [TaxId: 316]
(6)
3a
d1t0sc_
C:
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1t0sC00 (C:3-85)
2a: CATH_1t0sB00 (B:8-330)
View:
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Classes
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)
(
)
Architectures
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)
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)
Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
TmoB-like (Pfam 06234). Chain C
(13)
Pseudomonas stutzeri. Organism_taxid: 316.
(3)
1a
1t0sC00
C:3-85
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Ribonucleotide Reductase, subunit A
(86)
Homologous Superfamily
:
Ribonucleotide Reductase, subunit A
(86)
Pseudomonas stutzeri. Organism_taxid: 316.
(3)
2a
1t0sB00
B:8-330
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Pfam Domains
(3, 4)
Info
all PFAM domains
1a: PFAM_Phenol_Hydrox_1t0sA01 (A:17-251)
1b: PFAM_Phenol_Hydrox_1t0sB01 (B:56-281)
2a: PFAM_YHS_1t0sA02 (A:405-448)
3a: PFAM_TmoB_1t0sC01 (C:3-85)
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Clans
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Organisms
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)
(
)
Clan
:
Ferritin
(185)
Family
:
Phenol_Hydrox
(21)
Pseudomonas stutzeri (Pseudomonas perfectomarina)
(4)
1a
Phenol_Hydrox-1t0sA01
A:17-251
1b
Phenol_Hydrox-1t0sB01
B:56-281
Clan
:
TRASH
(61)
Family
:
YHS
(8)
Pseudomonas stutzeri (Pseudomonas perfectomarina)
(4)
2a
YHS-1t0sA02
A:405-448
Clan
:
Ubiquitin
(279)
Family
:
TmoB
(8)
Pseudomonas stutzeri (Pseudomonas perfectomarina)
(4)
3a
TmoB-1t0sC01
C:3-85
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (163 KB)
Header - Asym.Unit
Biol.Unit 1 (309 KB)
Header - Biol.Unit 1
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