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1T0O
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (78 KB)
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(1)
Title
:
THE STRUCTURE OF ALPHA-GALACTOSIDASE FROM TRICHODERMA REESEI COMPLEXED WITH BETA-D-GALACTOSE
Authors
:
A. M. Golubev, R. A. P. Nagem, J. R. Brandao Neto, K. N. Neustroev, E. V. E A. A. Kulminskaya, K. A. Shabalin, A. N. Savel'Ev, I. Polikarpov
Date
:
12 Apr 04 (Deposition) - 12 Oct 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.96
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
(Beta/Alpha)8 Barrel, Two Domains, Glycoprotein, Complex, Beta-D- Galactose, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. M. Golubev, R. A. P. Nagem, J. R. Brandao Neto, K. N. Neustroev, E. V. Eneyskaya, A. A. Kulminskaya, K. A. Shabalin, A. N. Savel'Ev, I. Polikarpov
Crystal Structure Of Alpha-Galactosidase From Trichoderma Reesei And Its Complex With Galactose: Implications For Catalytic Mechanism
J. Mol. Biol. V. 339 413 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 16)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: BETA-D-GALACTOSE (GALa)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
GAL
1
Ligand/Ion
BETA-D-GALACTOSE
3
MAN
5
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:58 , MET A:59 , LYS A:60 , ASP A:61 , ASN A:71 , ARG A:74 , NAG A:501
BINDING SITE FOR RESIDUE NAG A 500
02
AC2
SOFTWARE
NAG A:500
BINDING SITE FOR RESIDUE NAG A 501
03
AC3
SOFTWARE
ASN A:157 , PHE A:243 , TRP A:331 , NAG A:601 , HOH A:1043 , HOH A:1251
BINDING SITE FOR RESIDUE NAG A 600
04
AC4
SOFTWARE
PHE A:243 , TRP A:331 , NAG A:600 , BMA A:602 , MAN A:604 , MAN A:606 , HOH A:1179
BINDING SITE FOR RESIDUE NAG A 601
05
AC5
SOFTWARE
NAG A:601 , MAN A:603 , MAN A:604
BINDING SITE FOR RESIDUE BMA A 602
06
AC6
SOFTWARE
BMA A:602 , HOH A:1025 , HOH A:1151
BINDING SITE FOR RESIDUE MAN A 603
07
AC7
SOFTWARE
ASN A:246 , NAG A:601 , BMA A:602 , MAN A:605 , MAN A:606 , HOH A:1104 , HOH A:1282
BINDING SITE FOR RESIDUE MAN A 604
08
AC8
SOFTWARE
ASN A:246 , MAN A:604 , HOH A:1167 , HOH A:1282
BINDING SITE FOR RESIDUE MAN A 605
09
AC9
SOFTWARE
SER A:242 , PHE A:243 , LYS A:244 , LEU A:245 , THR A:321 , PRO A:322 , TRP A:331 , NAG A:601 , MAN A:604 , HOH A:1000 , HOH A:1077
BINDING SITE FOR RESIDUE MAN A 606
10
BC1
SOFTWARE
VAL A:2 , ASN A:215 , ASN A:246 , ASP A:249 , PHE A:250 , TRP A:251 , NAG A:701 , HOH A:948 , HOH A:1084 , HOH A:1111 , HOH A:1182 , HOH A:1185
BINDING SITE FOR RESIDUE NAG A 700
11
BC2
SOFTWARE
VAL A:2 , LYS A:10 , ASP A:249 , PHE A:250 , TRP A:251 , NAG A:700 , BMA A:702 , HOH A:943 , HOH A:1062 , HOH A:1281
BINDING SITE FOR RESIDUE NAG A 701
12
BC3
SOFTWARE
VAL A:315 , NAG A:701 , MAN A:703 , HOH A:1062 , HOH A:1068 , HOH A:1137
BINDING SITE FOR RESIDUE BMA A 702
13
BC4
SOFTWARE
BMA A:702 , HOH A:1258
BINDING SITE FOR RESIDUE MAN A 703
14
BC5
SOFTWARE
ASP A:65 , ASN A:328 , ASN A:334 , TYR A:337 , NAG A:801 , HOH A:1003
BINDING SITE FOR RESIDUE NAG A 800
15
BC6
SOFTWARE
ILE A:327 , NAG A:800 , HOH A:1019 , HOH A:1092 , HOH A:1162
BINDING SITE FOR RESIDUE NAG A 801
16
BC7
SOFTWARE
TRP A:19 , ASP A:54 , ASP A:55 , TYR A:96 , CYS A:104 , LYS A:130 , ASP A:132 , LYS A:193 , CYS A:203 , TRP A:205 , ARG A:222 , ASP A:226 , MET A:258 , HOH A:957 , HOH A:1022
BINDING SITE FOR RESIDUE GAL A 901
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1t0oa1 (A:315-417)
2a: SCOP_d1t0oa2 (A:1-314)
View:
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Classes
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Superfamilies
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Glycosyl hydrolase domain
(397)
Superfamily
:
Glycosyl hydrolase domain
(397)
Family
:
alpha-Amylases, C-terminal beta-sheet domain
(272)
Protein domain
:
Melibiase
(21)
Trichoderma reesei [TaxId: 51453]
(2)
1a
d1t0oa1
A:315-417
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
(Trans)glycosidases
(1191)
Family
:
Amylase, catalytic domain
(385)
Protein domain
:
Melibiase
(21)
Trichoderma reesei [TaxId: 51453]
(2)
2a
d1t0oa2
A:1-314
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1t0oA01 (A:1-315)
2a: CATH_1t0oA02 (A:316-417)
View:
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Classes
(
)
(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Hypocrea jecorina. Organism_taxid: 51453
(2)
1a
1t0oA01
A:1-315
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Golgi alpha-mannosidase II
(346)
Hypocrea jecorina. Organism_taxid: 51453
(2)
2a
1t0oA02
A:316-417
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein
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Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
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Asym.Unit (84 KB)
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Header - Biol.Unit 1
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