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1SZE
Biol. Unit 1
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Asym.Unit (136 KB)
Biol.Unit 1 (253 KB)
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(1)
Title
:
L230A MUTANT FLAVOCYTOCHROME B2 WITH BENZOYLFORMATE
Authors
:
C. G. Mowat, A. Wehenkel, A. J. Green, M. D. Walkinshaw, G. A. Reid, S. K. C
Date
:
05 Apr 04 (Deposition) - 27 Jul 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Flavocytochrome; L-Lactate Dehydrogenase; Benzoylformate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. G. Mowat, A. Wehenkel, A. J. Green, M. D. Walkinshaw, G. A. Reid, S. K. Chapman
Altered Substrate Specificity In Flavocytochrome B(2): Structural Insights Into The Mechanism Of L-Lactate Dehydrogenation
Biochemistry V. 43 9519 2004
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: BENZOYL-FORMIC ACID (173a)
1b: BENZOYL-FORMIC ACID (173b)
2a: FLAVIN MONONUCLEOTIDE (FMNa)
2b: FLAVIN MONONUCLEOTIDE (FMNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
173
4
Ligand/Ion
BENZOYL-FORMIC ACID
2
FMN
4
Ligand/Ion
FLAVIN MONONUCLEOTIDE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:143 , TYR A:144 , SER A:195 , ALA A:196 , THR A:197 , ALA A:198 , SER A:228 , GLN A:252 , TYR A:254 , THR A:280 , LYS A:349 , SER A:371 , HIS A:373 , GLY A:374 , ARG A:376 , ASP A:409 , GLY A:410 , GLY A:411 , ARG A:413 , GLY A:432 , ARG A:433 , 173 A:5580 , HOH A:5600 , HOH A:5616
BINDING SITE FOR RESIDUE FMN A 5570
2
AC2
SOFTWARE
TYR B:143 , TYR B:144 , SER B:195 , ALA B:196 , THR B:197 , ALA B:198 , SER B:228 , GLN B:252 , TYR B:254 , THR B:280 , LYS B:349 , SER B:371 , HIS B:373 , GLY B:374 , ARG B:376 , ASP B:409 , GLY B:410 , GLY B:411 , ARG B:413 , LEU B:431 , GLY B:432 , ARG B:433 , 173 B:9580 , HOH B:9582 , HOH B:9598
BINDING SITE FOR RESIDUE FMN B 9570
3
AC3
SOFTWARE
TYR A:143 , TYR A:254 , ILE A:326 , HIS A:373 , ARG A:376 , FMN A:5570
BINDING SITE FOR RESIDUE 173 A 5580
4
AC4
SOFTWARE
TYR B:143 , ALA B:230 , TYR B:254 , HIS B:373 , ARG B:376 , FMN B:9570
BINDING SITE FOR RESIDUE 173 B 9580
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: FMN_HYDROXY_ACID_DH_2 (A:117-483,B:117-483)
2: FMN_HYDROXY_ACID_DH_1 (A:371-377,B:371-377)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FMN_HYDROXY_ACID_DH_2
PS51349
FMN-dependent alpha-hydroxy acid dehydrogenase domain profile.
CYB2_YEAST
197-563
4
A:117-483
B:117-483
2
FMN_HYDROXY_ACID_DH_1
PS00557
FMN-dependent alpha-hydroxy acid dehydrogenases active site.
CYB2_YEAST
451-457
4
A:371-377
B:371-377
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1szea_ (A:)
1b: SCOP_d1szeb_ (B:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
FMN-linked oxidoreductases
(290)
Family
:
FMN-linked oxidoreductases
(242)
Protein domain
:
Flavocytochrome b2, C-terminal domain
(11)
Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
(11)
1a
d1szea_
A:
1b
d1szeb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1szeB01 (B:112-493)
1b: CATH_1szeA01 (A:112-493)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Baker's yeast (Saccharomyces cerevisiae)
(49)
1a
1szeB01
B:112-493
1b
1szeA01
A:112-493
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_FMN_dh_1szeB01 (B:132-480)
1b: PFAM_FMN_dh_1szeB02 (B:132-480)
2a: PFAM_Cyt_b5_1szeB03 (B:100-162)
2b: PFAM_Cyt_b5_1szeB04 (B:100-162)
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Clan
:
TIM_barrel
(694)
Family
:
FMN_dh
(23)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(8)
1a
FMN_dh-1szeB01
B:132-480
1b
FMN_dh-1szeB02
B:132-480
Clan
:
no clan defined [family: Cyt-b5]
(29)
Family
:
Cyt-b5
(29)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(9)
2a
Cyt-b5-1szeB03
B:100-162
2b
Cyt-b5-1szeB04
B:100-162
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