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1SZ3
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NUDIX HYDROLASE DR1025 IN COMPLEXED WITH GNP AND MG+2
Authors
:
W. Ranatunga, E. E. Hill, J. L. Mooster, E. L. Holbrook, U. Schulze- Gahmen, W. Xu, M. J. Bessman, S. E. Brenner, S. R. Holbrook, Berkeley Structural Genomics Center (Bsgc)
Date
:
02 Apr 04 (Deposition) - 11 May 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nudix Fold, Alpha-Beta-Alpha Sandwich, Structural Genomics, Bsgc Structure Funded By Nih, Protein Structure Initiative, Psi, Berkeley Structural Genomics Center, Hydrolase
(Keyword Search:
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Reference
:
W. Ranatunga, E. E. Hill, J. L. Mooster, E. L. Holbrook, U. Schulze-Gahmen, W. Xu, M. J. Bessman, S. E. Brenner, S. R. Holbrook
Structural Studies Of The Nudix Hydrolase Dr1025 From Deinococcus Radiodurans And Its Ligand Complexes.
J. Mol. Biol. V. 339 103 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPa)
1b: PHOSPHOAMINOPHOSPHONIC ACID-GUANYL... (GNPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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No.
Name
Count
Type
Full Name
1
GNP
2
Ligand/Ion
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
2
MG
2
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:65 , HOH A:765 , HOH A:846 , HOH A:853
BINDING SITE FOR RESIDUE MG A 201
2
AC2
SOFTWARE
GLU B:65 , HOH B:817 , HOH B:844 , HOH B:878
BINDING SITE FOR RESIDUE MG B 202
3
AC3
SOFTWARE
LEU A:13 , ALA A:15 , HIS A:46 , SER A:49 , GLY A:50 , ALA A:51 , GLU A:69 , PHE A:87 , ASP A:89 , ILE A:93 , ARG A:95 , HOH A:810 , HOH A:845 , MET B:1 , GLU B:2 , ASP B:4 , ARG B:6
BINDING SITE FOR RESIDUE GNP A 3030
4
AC4
SOFTWARE
MET A:1 , GLU A:2 , ASP A:4 , HOH A:793 , HOH A:804 , HOH A:862 , LEU B:13 , ALA B:15 , SER B:49 , GLY B:50 , ALA B:51 , PHE B:87 , PRO B:88 , ASP B:89 , VAL B:91 , ILE B:93 , ARG B:95 , HOH B:817 , HOH B:867
BINDING SITE FOR RESIDUE GNP A 2030
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1sz3a_ (A:)
1b: SCOP_d1sz3b_ (B:)
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Protein Domains
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(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nudix
(141)
Superfamily
:
Nudix
(141)
Family
:
MutT-like
(82)
Protein domain
:
Hypothetical protein DR1025
(4)
Deinococcus radiodurans [TaxId: 1299]
(4)
1a
d1sz3a_
A:
1b
d1sz3b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1sz3A00 (A:1-158)
1b: CATH_1sz3B00 (B:1-158)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Nucleoside Triphosphate Pyrophosphohydrolase
(89)
Homologous Superfamily
:
Nucleoside Triphosphate Pyrophosphohydrolase
(89)
Deinococcus radiodurans. Organism_taxid: 1299.
(7)
1a
1sz3A00
A:1-158
1b
1sz3B00
B:1-158
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NUDIX_1sz3B01 (B:12-146)
1b: PFAM_NUDIX_1sz3B02 (B:12-146)
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)
Clan
:
NUDIX
(85)
Family
:
NUDIX
(78)
Deinococcus radiodurans
(8)
1a
NUDIX-1sz3B01
B:12-146
1b
NUDIX-1sz3B02
B:12-146
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Asymmetric Unit 1
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Asym.Unit (61 KB)
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