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1SYO
Asym. Unit
Info
Asym.Unit (148 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
N-TERMINAL 3 DOMAINS OF CI-MPR BOUND TO MANNOSE 6-PHOSPHATE
Authors
:
L. J. Olson, N. M. Dahms, J. -J. P. Kim
Date
:
01 Apr 04 (Deposition) - 29 Jun 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Lectin; Receptor; Mannose 6-Phosphate, Protein Transport, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. J. Olson, N. M. Dahms, J. -J. P. Kim
The N-Terminal Carbohydrate Recognition Site Of The Cation-Independent Mannose 6-Phosphate Receptor
J. Biol. Chem. V. 279 34000 2004
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Hetero Components
(5, 10)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: ALPHA-D-MANNOSE-6-PHOSPHATE (M6Pa)
3b: ALPHA-D-MANNOSE-6-PHOSPHATE (M6Pb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GOL
2
Ligand/Ion
GLYCEROL
3
M6P
2
Ligand/Ion
ALPHA-D-MANNOSE-6-PHOSPHATE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NDG
1
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:76 , NAG A:502
BINDING SITE FOR RESIDUE NDG A 501
02
AC2
SOFTWARE
NDG A:501 , BMA A:503
BINDING SITE FOR RESIDUE NAG A 502
03
AC3
SOFTWARE
NAG A:502 , NAG B:1501
BINDING SITE FOR RESIDUE BMA A 503
04
AC4
SOFTWARE
BMA A:503 , ASN B:1076 , GLN B:1089
BINDING SITE FOR RESIDUE NAG B 1501
05
AC5
SOFTWARE
GLU A:116 , GLN A:364 , ASN A:365
BINDING SITE FOR RESIDUE NAG A 601
06
AC6
SOFTWARE
ARG B:1288 , GLN B:1364 , ASN B:1365 , HOH B:1956 , HOH B:1993 , HOH B:1998
BINDING SITE FOR RESIDUE NAG B 1601
07
AC7
SOFTWARE
TYR A:324 , GLN A:348 , GLN A:356 , CYS A:385 , SER A:386 , ARG A:391 , GLU A:416 , CYS A:419 , TYR A:421 , HOH A:1745 , HOH A:1828
BINDING SITE FOR RESIDUE M6P A 500
08
AC8
SOFTWARE
LYS A:350 , HOH A:1846 , TYR B:1324 , GLN B:1348 , GLN B:1356 , CYS B:1385 , SER B:1386 , ARG B:1391 , GLU B:1416 , TYR B:1421 , HOH B:1897 , HOH B:1904 , HOH B:1980
BINDING SITE FOR RESIDUE M6P B 1500
09
AC9
SOFTWARE
LEU A:198 , ARG A:200 , PHE A:236 , LYS A:265 , CYS A:268
BINDING SITE FOR RESIDUE GOL A 4005
10
BC1
SOFTWARE
THR B:1367 , MET B:1392 , HOH B:1728 , HOH B:1834
BINDING SITE FOR RESIDUE GOL B 4006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1syoa1 (A:7-129)
1b: SCOP_d1syoa2 (A:130-280)
1c: SCOP_d1syoa3 (A:281-432)
1d: SCOP_d1syob1 (B:1007-1129)
1e: SCOP_d1syob2 (B:1130-1280)
1f: SCOP_d1syob3 (B:1281-1432)
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)
(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Mannose 6-phosphate receptor domain
(26)
Superfamily
:
Mannose 6-phosphate receptor domain
(26)
Family
:
Mannose 6-phosphate receptor domain
(26)
Protein domain
:
Cation-independent mannose-6-phosphate receptor (MIR-receptor)
(11)
Cow (Bos taurus) [TaxId: 9913]
(5)
1a
d1syoa1
A:7-129
1b
d1syoa2
A:130-280
1c
d1syoa3
A:281-432
1d
d1syob1
B:1007-1129
1e
d1syob2
B:1130-1280
1f
d1syob3
B:1281-1432
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1syoA03 (A:286-432)
1b: CATH_1syoB03 (B:1286-1432)
1c: CATH_1syoB02 (B:1130-1285)
1d: CATH_1syoA02 (A:130-285)
1e: CATH_1syoA01 (A:7-129)
1f: CATH_1syoB01 (B:1007-1129)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Distorted Sandwich
(506)
Topology
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Homologous Superfamily
:
Cation-dependent Mannose-6-phosphate Receptor; Chain A
(19)
Cattle (Bos taurus)
(11)
1a
1syoA03
A:286-432
1b
1syoB03
B:1286-1432
1c
1syoB02
B:1130-1285
1d
1syoA02
A:130-285
1e
1syoA01
A:7-129
1f
1syoB01
B:1007-1129
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_CIMR_1syoB01 (B:1388-1432)
1b: PFAM_CIMR_1syoB02 (B:1388-1432)
1c: PFAM_CIMR_1syoB03 (B:1388-1432)
1d: PFAM_CIMR_1syoB04 (B:1388-1432)
1e: PFAM_CIMR_1syoB05 (B:1388-1432)
1f: PFAM_CIMR_1syoB06 (B:1388-1432)
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Clans
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)
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)
Clan
:
M6PR
(17)
Family
:
CIMR
(8)
Bos taurus (Bovine)
(5)
1a
CIMR-1syoB01
B:1388-1432
1b
CIMR-1syoB02
B:1388-1432
1c
CIMR-1syoB03
B:1388-1432
1d
CIMR-1syoB04
B:1388-1432
1e
CIMR-1syoB05
B:1388-1432
1f
CIMR-1syoB06
B:1388-1432
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