PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
1SXG
Biol. Unit 3
Info
Asym.Unit (265 KB)
Biol.Unit 1 (90 KB)
Biol.Unit 2 (90 KB)
Biol.Unit 3 (89 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURAL STUDIES ON THE APO TRANSCRIPTION FACTOR FORM B. MEGATERIUM
Authors
:
M. A. Schumacher, G. S. Allen, M. Diel, G. Seidel, W. Hillen, R. G. Brennan
Date
:
30 Mar 04 (Deposition) - 19 Oct 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.75
Chains
:
Asym. Unit : A,B,D,F,I,P
Biol. Unit 1: A,D (1x)
Biol. Unit 2: B,I (1x)
Biol. Unit 3: F,P (1x)
Keywords
:
Allosterism; Phosphoprotein; Transcription Regulation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, G. S. Allen, M. Diel, G. Seidel, W. Hillen, R. G. Brennan
Structural Studies On The Apo Transcription Factor Form B. Megaterium
Cell(Cambridge, Mass. ) V. 118 731 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
1a: 2-PHENYLAMINO-ETHANESULFONIC ACID (171a)
1b: 2-PHENYLAMINO-ETHANESULFONIC ACID (171b)
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1sxga_ (A:)
1b: SCOP_d1sxgb_ (B:)
1c: SCOP_d1sxgd_ (D:)
1d: SCOP_d1sxgf_ (F:)
1e: SCOP_d1sxgi_ (I:)
1f: SCOP_d1sxgp_ (P:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like I
(179)
Superfamily
:
Periplasmic binding protein-like I
(179)
Family
:
L-arabinose binding protein-like
(114)
Protein domain
:
Glucose-resistance amylase regulator CcpA, C-terminal domain
(11)
Bacillus megaterium [TaxId: 1404]
(10)
1a
d1sxga_
A:
1b
d1sxgb_
B:
1c
d1sxgd_
D:
1d
d1sxgf_
F:
1e
d1sxgi_
I:
1f
d1sxgp_
P:
[
close SCOP info
]
CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_1sxgA02 (A:161-291,A:324-332)
1b: CATH_1sxgB02 (B:161-291,B:324-332)
1c: CATH_1sxgD02 (D:161-291,D:324-332)
1d: CATH_1sxgA01 (A:58-160,A:292-323)
1e: CATH_1sxgI01 (I:58-160,I:292-323)
1f: CATH_1sxgB01 (B:60-160,B:292-323)
1g: CATH_1sxgD01 (D:60-160,D:292-323)
1h: CATH_1sxgF01 (F:60-160,F:292-323)
1i: CATH_1sxgP01 (P:60-160,P:292-323)
1j: CATH_1sxgF02 (F:161-291,F:324-332)
1k: CATH_1sxgI02 (I:161-291,I:324-332)
1l: CATH_1sxgP02 (P:161-291,P:324-332)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Bacillus megaterium. Organism_taxid: 1404.
(3)
1a
1sxgA02
A:161-291,A:324-332
1b
1sxgB02
B:161-291,B:324-332
1c
1sxgD02
D:161-291,D:324-332
1d
1sxgA01
A:58-160,A:292-323
1e
1sxgI01
I:58-160,I:292-323
1f
1sxgB01
B:60-160,B:292-323
1g
1sxgD01
D:60-160,D:292-323
1h
1sxgF01
F:60-160,F:292-323
1i
1sxgP01
P:60-160,P:292-323
1j
1sxgF02
F:161-291,F:324-332
1k
1sxgI02
I:161-291,I:324-332
1l
1sxgP02
P:161-291,P:324-332
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Peripla_BP_3_1sxgP01 (P:169-331)
1b: PFAM_Peripla_BP_3_1sxgP02 (P:169-331)
1c: PFAM_Peripla_BP_3_1sxgP03 (P:169-331)
1d: PFAM_Peripla_BP_3_1sxgP04 (P:169-331)
1e: PFAM_Peripla_BP_3_1sxgP05 (P:169-331)
1f: PFAM_Peripla_BP_3_1sxgP06 (P:169-331)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Periplas_BP
(97)
Family
:
Peripla_BP_3
(41)
Bacillus megaterium
(7)
1a
Peripla_BP_3-1sxgP01
P:169-331
1b
Peripla_BP_3-1sxgP02
P:169-331
1c
Peripla_BP_3-1sxgP03
P:169-331
1d
Peripla_BP_3-1sxgP04
P:169-331
1e
Peripla_BP_3-1sxgP05
P:169-331
1f
Peripla_BP_3-1sxgP06
P:169-331
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain F
Chain P
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (265 KB)
Header - Asym.Unit
Biol.Unit 1 (90 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
Biol.Unit 3 (89 KB)
Header - Biol.Unit 3
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
1SXG
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
