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1SX4
Asym. Unit
Info
Asym.Unit (1.1 MB)
Biol.Unit 1, α-C (1.1 MB)
Biol.Unit 1 (1.1 MB)
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(1)
Title
:
GROEL-GROES-ADP7
Authors
:
C. Chaudhry, A. L. Horwich, A. T. Brunger, P. D. Adams
Date
:
30 Mar 04 (Deposition) - 01 Mar 05 (Release) - 26 Mar 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U (1x)
Keywords
:
Molecular Chaperone, Protein Folding, Chaperone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Chaudhry, A. L. Horwich, A. T. Brunger, P. D. Adams
Exploring The Structural Dynamics Of The E. Coli Chaperonin Groel Using Translation-Libration-Screw Crystallographic Refinement Of Intermediate States.
J. Mol. Biol. V. 342 229 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 14)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
1c: ADENOSINE-5'-DIPHOSPHATE (ADPc)
1d: ADENOSINE-5'-DIPHOSPHATE (ADPd)
1e: ADENOSINE-5'-DIPHOSPHATE (ADPe)
1f: ADENOSINE-5'-DIPHOSPHATE (ADPf)
1g: ADENOSINE-5'-DIPHOSPHATE (ADPg)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
7
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
7
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:87 , ADP A:600
BINDING SITE FOR RESIDUE MG A 601
02
AC2
SOFTWARE
ASP B:87 , ADP B:600
BINDING SITE FOR RESIDUE MG B 601
03
AC3
SOFTWARE
ASP C:87 , ADP C:600
BINDING SITE FOR RESIDUE MG C 601
04
AC4
SOFTWARE
ASP D:87 , ADP D:600
BINDING SITE FOR RESIDUE MG D 601
05
AC5
SOFTWARE
ASP E:87 , ADP E:600
BINDING SITE FOR RESIDUE MG E 601
06
AC6
SOFTWARE
ASP F:87 , ADP F:600
BINDING SITE FOR RESIDUE MG F 601
07
AC7
SOFTWARE
ASP G:87 , ADP G:600
BINDING SITE FOR RESIDUE MG G 601
08
AC8
SOFTWARE
THR A:30 , LEU A:31 , GLY A:32 , PRO A:33 , LYS A:51 , ASP A:87 , GLY A:88 , THR A:90 , THR A:91 , ILE A:150 , GLY A:414 , GLY A:415 , ILE A:454 , TYR A:478 , ASN A:479 , ALA A:480 , ALA A:481 , ILE A:493 , ASP A:495 , MG A:601 , HOH A:610
BINDING SITE FOR RESIDUE ADP A 600
09
AC9
SOFTWARE
THR B:30 , LEU B:31 , GLY B:32 , PRO B:33 , LYS B:51 , ASP B:87 , GLY B:88 , THR B:90 , THR B:91 , ILE B:150 , GLY B:414 , GLY B:415 , TYR B:478 , ASN B:479 , ALA B:480 , ALA B:481 , ILE B:493 , ASP B:495 , MG B:601 , HOH B:605
BINDING SITE FOR RESIDUE ADP B 600
10
BC1
SOFTWARE
THR C:30 , LEU C:31 , GLY C:32 , PRO C:33 , LYS C:51 , ASP C:87 , GLY C:88 , THR C:90 , THR C:91 , ILE C:150 , GLY C:414 , GLY C:415 , ILE C:454 , TYR C:478 , ASN C:479 , ALA C:480 , ALA C:481 , ASP C:495 , MG C:601 , HOH C:607
BINDING SITE FOR RESIDUE ADP C 600
11
BC2
SOFTWARE
THR D:30 , LEU D:31 , GLY D:32 , PRO D:33 , LYS D:51 , ASP D:87 , GLY D:88 , THR D:90 , THR D:91 , ILE D:150 , GLY D:414 , GLY D:415 , ILE D:454 , TYR D:478 , ASN D:479 , ALA D:480 , ALA D:481 , ILE D:493 , ASP D:495 , MG D:601 , HOH D:604
BINDING SITE FOR RESIDUE ADP D 600
12
BC3
SOFTWARE
THR E:30 , LEU E:31 , GLY E:32 , PRO E:33 , LYS E:51 , ASP E:87 , GLY E:88 , THR E:90 , THR E:91 , ILE E:150 , GLY E:414 , GLY E:415 , TYR E:478 , ASN E:479 , ALA E:480 , ALA E:481 , ILE E:493 , ASP E:495 , MG E:601 , HOH E:608
BINDING SITE FOR RESIDUE ADP E 600
13
BC4
SOFTWARE
THR F:30 , LEU F:31 , GLY F:32 , PRO F:33 , LYS F:51 , ASP F:87 , GLY F:88 , THR F:89 , THR F:90 , THR F:91 , ILE F:150 , GLY F:414 , GLY F:415 , TYR F:478 , ASN F:479 , ALA F:480 , ALA F:481 , ILE F:493 , ASP F:495 , MG F:601 , HOH F:609
BINDING SITE FOR RESIDUE ADP F 600
14
BC5
SOFTWARE
THR G:30 , LEU G:31 , GLY G:32 , PRO G:33 , LYS G:51 , ASP G:87 , GLY G:88 , THR G:90 , THR G:91 , ILE G:150 , GLY G:414 , GLY G:415 , ILE G:454 , ASN G:479 , ALA G:480 , ALA G:481 , ILE G:493 , ASP G:495 , MG G:601 , HOH G:607 , HOH G:608
BINDING SITE FOR RESIDUE ADP G 600
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 21)
Info
All PROSITE Patterns/Profiles
1: CHAPERONINS_CPN10 (O:3-27,P:3-27,Q:3-27,R:3-27,S:3-27...)
2: CHAPERONINS_CPN60 (A:405-416,B:405-416,C:405-416,D:40...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHAPERONINS_CPN10
PS00681
Chaperonins cpn10 signature.
CH10_ECOLI
3-27
7
O:3-27
P:3-27
Q:3-27
R:3-27
S:3-27
T:3-27
U:3-27
2
CHAPERONINS_CPN60
PS00296
Chaperonins cpn60 signature.
CH60_ECOLI
405-416
14
A:405-416
B:405-416
C:405-416
D:405-416
E:405-416
F:405-416
G:405-416
H:405-416
I:405-416
J:405-416
K:405-416
L:405-416
M:405-416
N:405-416
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 7)
Info
All SCOP Domains
1a: SCOP_d1sx4o_ (O:)
1b: SCOP_d1sx4p_ (P:)
1c: SCOP_d1sx4q_ (Q:)
1d: SCOP_d1sx4r_ (R:)
1e: SCOP_d1sx4s_ (S:)
1f: SCOP_d1sx4t_ (T:)
1g: SCOP_d1sx4u_ (U:)
View:
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Classes
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)
(
)
Folds
(
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(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
GroES-like
(132)
Superfamily
:
GroES-like
(130)
Family
:
GroES
(15)
Protein domain
:
Chaperonin-10 (GroES)
(13)
Escherichia coli [TaxId: 562]
(7)
1a
d1sx4o_
O:
1b
d1sx4p_
P:
1c
d1sx4q_
Q:
1d
d1sx4r_
R:
1e
d1sx4s_
S:
1f
d1sx4t_
T:
1g
d1sx4u_
U:
[
close SCOP info
]
CATH Domains
(4, 49)
Info
all CATH domains
1a: CATH_1sx4A02 (A:136-191,A:373-410)
1b: CATH_1sx4B02 (B:136-191,B:373-410)
1c: CATH_1sx4C02 (C:136-191,C:373-410)
1d: CATH_1sx4D02 (D:136-191,D:373-410)
1e: CATH_1sx4E02 (E:136-191,E:373-410)
1f: CATH_1sx4F02 (F:136-191,F:373-410)
1g: CATH_1sx4G02 (G:136-191,G:373-410)
1h: CATH_1sx4H02 (H:136-191,H:373-410)
1i: CATH_1sx4I02 (I:136-191,I:373-410)
1j: CATH_1sx4J02 (J:136-191,J:373-410)
1k: CATH_1sx4K02 (K:136-191,K:373-410)
1l: CATH_1sx4L02 (L:136-191,L:373-410)
1m: CATH_1sx4M02 (M:136-191,M:373-410)
1n: CATH_1sx4N02 (N:136-191,N:373-410)
2a: CATH_1sx4A03 (A:192-372)
2b: CATH_1sx4B03 (B:192-372)
2c: CATH_1sx4C03 (C:192-372)
2d: CATH_1sx4D03 (D:192-372)
2e: CATH_1sx4E03 (E:192-372)
2f: CATH_1sx4F03 (F:192-372)
2g: CATH_1sx4G03 (G:192-372)
2h: CATH_1sx4H03 (H:192-372)
2i: CATH_1sx4I03 (I:192-372)
2j: CATH_1sx4J03 (J:192-372)
2k: CATH_1sx4K03 (K:192-372)
2l: CATH_1sx4L03 (L:192-372)
2m: CATH_1sx4M03 (M:192-372)
2n: CATH_1sx4N03 (N:192-372)
3a: CATH_1sx4A01 (A:2-135,A:411-525)
3b: CATH_1sx4B01 (B:2-135,B:411-525)
3c: CATH_1sx4C01 (C:2-135,C:411-525)
3d: CATH_1sx4D01 (D:2-135,D:411-525)
3e: CATH_1sx4E01 (E:2-135,E:411-525)
3f: CATH_1sx4F01 (F:2-135,F:411-525)
3g: CATH_1sx4G01 (G:2-135,G:411-525)
3h: CATH_1sx4H01 (H:2-135,H:411-525)
3i: CATH_1sx4I01 (I:2-135,I:411-525)
3j: CATH_1sx4J01 (J:2-135,J:411-525)
3k: CATH_1sx4K01 (K:2-135,K:411-525)
3l: CATH_1sx4L01 (L:2-135,L:411-525)
3m: CATH_1sx4M01 (M:2-135,M:411-525)
3n: CATH_1sx4N01 (N:2-135,N:411-525)
4a: CATH_1sx4O00 (O:1-97)
4b: CATH_1sx4P00 (P:1-97)
4c: CATH_1sx4Q00 (Q:1-97)
4d: CATH_1sx4R00 (R:1-97)
4e: CATH_1sx4S00 (S:1-97)
4f: CATH_1sx4T00 (T:1-97)
4g: CATH_1sx4U00 (U:1-97)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GROEL; domain 2
(26)
Homologous Superfamily
:
GROEL, domain 2
(26)
Escherichia coli. Organism_taxid: 562.
(7)
1a
1sx4A02
A:136-191,A:373-410
1b
1sx4B02
B:136-191,B:373-410
1c
1sx4C02
C:136-191,C:373-410
1d
1sx4D02
D:136-191,D:373-410
1e
1sx4E02
E:136-191,E:373-410
1f
1sx4F02
F:136-191,F:373-410
1g
1sx4G02
G:136-191,G:373-410
1h
1sx4H02
H:136-191,H:373-410
1i
1sx4I02
I:136-191,I:373-410
1j
1sx4J02
J:136-191,J:373-410
1k
1sx4K02
K:136-191,K:373-410
1l
1sx4L02
L:136-191,L:373-410
1m
1sx4M02
M:136-191,M:373-410
1n
1sx4N02
N:136-191,N:373-410
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
GroEL
(39)
Homologous Superfamily
:
GroEL
(39)
Escherichia coli. Organism_taxid: 562.
(7)
2a
1sx4A03
A:192-372
2b
1sx4B03
B:192-372
2c
1sx4C03
C:192-372
2d
1sx4D03
D:192-372
2e
1sx4E03
E:192-372
2f
1sx4F03
F:192-372
2g
1sx4G03
G:192-372
2h
1sx4H03
H:192-372
2i
1sx4I03
I:192-372
2j
1sx4J03
J:192-372
2k
1sx4K03
K:192-372
2l
1sx4L03
L:192-372
2m
1sx4M03
M:192-372
2n
1sx4N03
N:192-372
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GROEL; domain 1
(26)
Homologous Superfamily
:
GROEL, domain 1
(26)
Escherichia coli. Organism_taxid: 562.
(7)
3a
1sx4A01
A:2-135,A:411-525
3b
1sx4B01
B:2-135,B:411-525
3c
1sx4C01
C:2-135,C:411-525
3d
1sx4D01
D:2-135,D:411-525
3e
1sx4E01
E:2-135,E:411-525
3f
1sx4F01
F:2-135,F:411-525
3g
1sx4G01
G:2-135,G:411-525
3h
1sx4H01
H:2-135,H:411-525
3i
1sx4I01
I:2-135,I:411-525
3j
1sx4J01
J:2-135,J:411-525
3k
1sx4K01
K:2-135,K:411-525
3l
1sx4L01
L:2-135,L:411-525
3m
1sx4M01
M:2-135,M:411-525
3n
1sx4N01
N:2-135,N:411-525
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
10 Kd Chaperonin, Protein Cpn10; Chain O
(11)
Homologous Superfamily
:
10 Kd Chaperonin, Protein Cpn10; Chain O
(11)
Escherichia coli. Organism_taxid: 562.
(4)
4a
1sx4O00
O:1-97
4b
1sx4P00
P:1-97
4c
1sx4Q00
Q:1-97
4d
1sx4R00
R:1-97
4e
1sx4S00
S:1-97
4f
1sx4T00
T:1-97
4g
1sx4U00
U:1-97
[
close CATH info
]
Pfam Domains
(2, 21)
Info
all PFAM domains
1a: PFAM_Cpn10_1sx4U01 (U:2-95)
1b: PFAM_Cpn10_1sx4U02 (U:2-95)
1c: PFAM_Cpn10_1sx4U03 (U:2-95)
1d: PFAM_Cpn10_1sx4U04 (U:2-95)
1e: PFAM_Cpn10_1sx4U05 (U:2-95)
1f: PFAM_Cpn10_1sx4U06 (U:2-95)
1g: PFAM_Cpn10_1sx4U07 (U:2-95)
2a: PFAM_Cpn60_TCP1_1sx4N01 (N:23-524)
2b: PFAM_Cpn60_TCP1_1sx4N02 (N:23-524)
2c: PFAM_Cpn60_TCP1_1sx4N03 (N:23-524)
2d: PFAM_Cpn60_TCP1_1sx4N04 (N:23-524)
2e: PFAM_Cpn60_TCP1_1sx4N05 (N:23-524)
2f: PFAM_Cpn60_TCP1_1sx4N06 (N:23-524)
2g: PFAM_Cpn60_TCP1_1sx4N07 (N:23-524)
2h: PFAM_Cpn60_TCP1_1sx4N08 (N:23-524)
2i: PFAM_Cpn60_TCP1_1sx4N09 (N:23-524)
2j: PFAM_Cpn60_TCP1_1sx4N10 (N:23-524)
2k: PFAM_Cpn60_TCP1_1sx4N11 (N:23-524)
2l: PFAM_Cpn60_TCP1_1sx4N12 (N:23-524)
2m: PFAM_Cpn60_TCP1_1sx4N13 (N:23-524)
2n: PFAM_Cpn60_TCP1_1sx4N14 (N:23-524)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
Cpn10
(8)
Escherichia coli (strain K12)
(3)
1a
Cpn10-1sx4U01
U:2-95
1b
Cpn10-1sx4U02
U:2-95
1c
Cpn10-1sx4U03
U:2-95
1d
Cpn10-1sx4U04
U:2-95
1e
Cpn10-1sx4U05
U:2-95
1f
Cpn10-1sx4U06
U:2-95
1g
Cpn10-1sx4U07
U:2-95
Clan
:
no clan defined [family: Cpn60_TCP1]
(28)
Family
:
Cpn60_TCP1
(28)
Escherichia coli (strain K12)
(13)
2a
Cpn60_TCP1-1sx4N01
N:23-524
2b
Cpn60_TCP1-1sx4N02
N:23-524
2c
Cpn60_TCP1-1sx4N03
N:23-524
2d
Cpn60_TCP1-1sx4N04
N:23-524
2e
Cpn60_TCP1-1sx4N05
N:23-524
2f
Cpn60_TCP1-1sx4N06
N:23-524
2g
Cpn60_TCP1-1sx4N07
N:23-524
2h
Cpn60_TCP1-1sx4N08
N:23-524
2i
Cpn60_TCP1-1sx4N09
N:23-524
2j
Cpn60_TCP1-1sx4N10
N:23-524
2k
Cpn60_TCP1-1sx4N11
N:23-524
2l
Cpn60_TCP1-1sx4N12
N:23-524
2m
Cpn60_TCP1-1sx4N13
N:23-524
2n
Cpn60_TCP1-1sx4N14
N:23-524
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
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Nucleic
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All Atoms
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
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Chain J
Chain K
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Chain M
Chain N
Chain O
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Chain Q
Chain R
Chain S
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Chain U
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
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