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1SWZ
Asym. Unit
Info
Asym.Unit (78 KB)
Biol.Unit 1 (73 KB)
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(1)
Title
:
USE OF AN ION-BINDING SITE TO BYPASS THE 1000-ATOM LIMIT TO AB INITIO STRUCTURE DETERMINATION BY DIRECT METHODS
Authors
:
B. H. M. Mooers, B. W. Matthews
Date
:
30 Mar 04 (Deposition) - 18 Jan 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.06
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rb+ Binding Site, Ab Initio Direct Methods, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. H. Mooers, B. W. Matthews
Use Of An Ion-Binding Site To Bypass The 1000-Atom Limit To Structure Determination By Direct Methods.
Acta Crystallogr. , Sect. D V. 60 1726 2004
(for further references see the
PDB file header
)
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: BETA-MERCAPTOETHANOL (BMEa)
1b: BETA-MERCAPTOETHANOL (BMEb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: PHOSPHATE ION (PO4a)
4a: RUBIDIUM ION (RBa)
4b: RUBIDIUM ION (RBb)
4c: RUBIDIUM ION (RBc)
4d: RUBIDIUM ION (RBd)
4e: RUBIDIUM ION (RBe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BME
2
Ligand/Ion
BETA-MERCAPTOETHANOL
2
CL
4
Ligand/Ion
CHLORIDE ION
3
PO4
1
Ligand/Ion
PHOSPHATE ION
4
RB
5
Ligand/Ion
RUBIDIUM ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:76 , ARG A:80 , LYS A:85 , ASP A:89 , HOH A:1071 , HOH A:1078
BINDING SITE FOR RESIDUE PO4 A 168
02
AC2
SOFTWARE
ASP A:89 , LEU A:91 , GLU A:96 , HOH A:1006 , HOH A:1080 , HOH A:1211 , HOH A:1247
BINDING SITE FOR RESIDUE RB A 601
03
AC3
SOFTWARE
GLU A:11 , TYR A:18 , HOH A:1121 , HOH A:1204 , HOH A:1212
BINDING SITE FOR RESIDUE RB A 602
04
AC4
SOFTWARE
GLY A:30 , PHE A:104 , GLN A:105 , HOH A:1058 , HOH A:1122 , HOH A:1208
BINDING SITE FOR RESIDUE RB A 603
05
AC5
SOFTWARE
SER A:44 , GLY A:113 , THR A:115 , HOH A:1282
BINDING SITE FOR RESIDUE RB A 604
06
AC6
SOFTWARE
TYR A:25 , PRO A:37 , HOH A:1206 , HOH A:1207
BINDING SITE FOR RESIDUE RB A 605
07
AC7
SOFTWARE
ARG A:125 , TRP A:126 , ASP A:127 , GLU A:128 , HOH A:1063 , HOH A:1711
BINDING SITE FOR RESIDUE CL A 611
08
AC8
SOFTWARE
LYS A:124 , THR A:142 , PRO A:143 , ASN A:144 , ARG A:145 , HOH A:1004 , HOH A:1287
BINDING SITE FOR RESIDUE CL A 612
09
AC9
SOFTWARE
ASN A:132 , LYS A:135 , HOH A:1034
BINDING SITE FOR RESIDUE CL A 613
10
BC1
SOFTWARE
HIS A:31 , LYS A:135 , HOH A:1017
BINDING SITE FOR RESIDUE CL A 614
11
BC2
SOFTWARE
VAL A:71 , VAL A:75 , TYR A:88
BINDING SITE FOR RESIDUE BME A 599
12
BC3
SOFTWARE
ASN A:68 , ALA A:72 , ILE A:100
BINDING SITE FOR RESIDUE BME A 600
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1swza_ (A:)
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(
)
(
)
Folds
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)
(
)
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)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Lysozyme-like
(1361)
Superfamily
:
Lysozyme-like
(1361)
Family
:
Phage lysozyme
(550)
Protein domain
:
Phage T4 lysozyme
(546)
Bacteriophage T4 [TaxId: 10665]
(546)
1a
d1swza_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1swzA00 (A:1-164)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Lysozyme
(1131)
Homologous Superfamily
:
[code=1.10.530.40, no name defined]
(526)
Enterobacteria phage t4. Organism_taxid: 10665.
(237)
1a
1swzA00
A:1-164
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Chain A
Asymmetric Unit 1
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Asym.Unit (78 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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