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1SW5
Biol. Unit 1
Info
Asym.Unit (188 KB)
Biol.Unit 1 (49 KB)
Biol.Unit 2 (48 KB)
Biol.Unit 3 (48 KB)
Biol.Unit 4 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PROX FROM ARCHEOGLOBUS FULGIDUS IN THE LIGAND FREE FORM
Authors
:
A. Schiefner, G. Holtmann, K. Diederichs, W. Welte, E. Bremer
Date
:
30 Mar 04 (Deposition) - 14 Sep 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Binding-Protein, Compatible Solutes, Cation-Pi Interactions, Non- Classical Hydrogen Bonds, Protein Binding
(Keyword Search:
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Reference
:
A. Schiefner, G. Holtmann, K. Diederichs, W. Welte, E. Bremer
Structural Basis For The Binding Of Compatible Solutes By Prox From The Hyperthermophilic Archaeon Archaeoglobus Fulgidus.
J. Biol. Chem. V. 279 48270 2004
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: MAGNESIUM ION (MGa)
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Sites
(4, 4)
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1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC5 (SOFTWARE)
4: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:74 , GLN A:75 , LYS B:74 , GLN B:75
BINDING SITE FOR RESIDUE CL B 401
2
AC3
SOFTWARE
GLY A:44 , THR A:45 , LEU A:46 , VAL A:47 , GLY B:44 , THR B:45 , LEU B:46 , VAL B:47
BINDING SITE FOR RESIDUE CL A 403
3
AC5
SOFTWARE
ASN A:69 , TYR A:214
BINDING SITE FOR RESIDUE CL A 405
4
AC9
SOFTWARE
ASP A:244 , HOH A:420 , HOH A:446 , HOH A:492 , HOH A:503
BINDING SITE FOR RESIDUE MG A 409
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1sw5a_ (A:)
1b: SCOP_d1sw5b_ (B:)
1c: SCOP_d1sw5c_ (C:)
1d: SCOP_d1sw5d_ (D:)
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Protein Domains
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Organisms
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Osmoprotection protein ProX
(5)
Archaeoglobus fulgidus [TaxId: 2234]
(5)
1a
d1sw5a_
A:
1b
d1sw5b_
B:
1c
d1sw5c_
C:
1d
d1sw5d_
D:
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1sw5A02 (A:110-213)
1b: CATH_1sw5B02 (B:110-213)
1c: CATH_1sw5C02 (C:110-213)
1d: CATH_1sw5D02 (D:110-213)
2a: CATH_1sw5A01 (A:6-109,A:214-275)
2b: CATH_1sw5B01 (B:6-109,B:214-275)
2c: CATH_1sw5C01 (C:6-109,C:214-275)
2d: CATH_1sw5D01 (D:6-109,D:214-275)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Osmoprotection protein (prox); domain 2
(4)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm 4304.
(4)
1a
1sw5A02
A:110-213
1b
1sw5B02
B:110-213
1c
1sw5C02
C:110-213
1d
1sw5D02
D:110-213
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Archaeoglobus fulgidus dsm 4304. Organism_taxid: 224325. Strain: dsm 4304.
(4)
2a
1sw5A01
A:6-109,A:214-275
2b
1sw5B01
B:6-109,B:214-275
2c
1sw5C01
C:6-109,C:214-275
2d
1sw5D01
D:6-109,D:214-275
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_OpuAC_1sw5D01 (D:6-270)
1b: PFAM_OpuAC_1sw5D02 (D:6-270)
1c: PFAM_OpuAC_1sw5D03 (D:6-270)
1d: PFAM_OpuAC_1sw5D04 (D:6-270)
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Clan
:
PBP
(391)
Family
:
OpuAC
(18)
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
(5)
1a
OpuAC-1sw5D01
D:6-270
1b
OpuAC-1sw5D02
D:6-270
1c
OpuAC-1sw5D03
D:6-270
1d
OpuAC-1sw5D04
D:6-270
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Chain A
Asymmetric Unit 1
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Asym.Unit (188 KB)
Header - Asym.Unit
Biol.Unit 1 (49 KB)
Header - Biol.Unit 1
Biol.Unit 2 (48 KB)
Header - Biol.Unit 2
Biol.Unit 3 (48 KB)
Header - Biol.Unit 3
Biol.Unit 4 (48 KB)
Header - Biol.Unit 4
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