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1SUS
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (78 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (75 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALFALFA FERUOYL COENZYME A 3-O-METHYLTRANSFERASE
Authors
:
J. -L. Ferrer, C. Zubieta, R. A. Dixon, J. P. Noel
Date
:
26 Mar 04 (Deposition) - 15 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B (2x)
Biol. Unit 3: D (2x)
Keywords
:
Rossmann Fold, Protein-Cofactor-Substrate Complex, O- Methyltransferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. -L. Ferrer, C. Zubieta, R. A. Dixon, J. P. Noel
Crystal Structures Of Alfalfa Caffeoyl Coenzyme A 3-O-Methyltransferase
Plant Physiol. V. 137 1009 2005
(for further references see the
PDB file header
)
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
2a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
2b: S-ADENOSYL-L-HOMOCYSTEINE (SAHb)
2c: S-ADENOSYL-L-HOMOCYSTEINE (SAHc)
2d: S-ADENOSYL-L-HOMOCYSTEINE (SAHd)
3a: SINAPOYL COENZYME A (SPFa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
4
Ligand/Ion
CALCIUM ION
2
SAH
4
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
3
SPF
1
Ligand/Ion
SINAPOYL COENZYME A
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:63 , ASP A:163 , ASP A:189 , ASN A:190
BINDING SITE FOR RESIDUE CA A 305
2
AC2
SOFTWARE
ASP B:163 , LYS B:166 , ASN B:190 , HOH B:311
BINDING SITE FOR RESIDUE CA B 306
3
AC3
SOFTWARE
ASP C:163 , ASP C:189 , ASN C:190 , SAH C:303
BINDING SITE FOR RESIDUE CA C 307
4
AC4
SOFTWARE
MET D:61 , ASP D:163 , ASP D:189 , ASN D:190 , SAH D:304
BINDING SITE FOR RESIDUE CA D 308
5
AC5
SOFTWARE
MET A:61 , THR A:62 , THR A:63 , GLU A:85 , GLY A:87 , VAL A:88 , TYR A:89 , SER A:93 , ASP A:111 , ILE A:112 , PRO A:139 , ALA A:140 , ASP A:163 , ALA A:164 , ASP A:165 , TYR A:172 , SPF A:401 , HOH A:402 , PRO B:57 , HOH B:312
BINDING SITE FOR RESIDUE SAH A 301
6
AC6
SOFTWARE
THR B:62 , GLY B:87 , VAL B:88 , TYR B:89 , SER B:93 , ASP B:111 , ILE B:112 , ASP B:163 , ASP B:165 , TYR B:172 , HOH B:308
BINDING SITE FOR RESIDUE SAH B 302
7
AC7
SOFTWARE
MET C:61 , GLY C:87 , SER C:93 , ILE C:112 , ASN C:113 , PHE C:161 , ASP C:163 , ASP C:165 , CA C:307 , HOH C:313 , LYS D:207
BINDING SITE FOR RESIDUE SAH C 303
8
AC8
SOFTWARE
PRO C:57 , MET D:61 , THR D:62 , THR D:63 , VAL D:88 , SER D:93 , ASP D:111 , ILE D:112 , ALA D:140 , ASP D:163 , ALA D:164 , ASP D:165 , TYR D:172 , CA D:308
BINDING SITE FOR RESIDUE SAH D 304
9
AC9
SOFTWARE
LYS A:21 , ILE A:60 , ASP A:163 , ALA A:164 , ASP A:165 , LYS A:166 , TRP A:193 , ASN A:194 , PRO A:204 , TYR A:212 , SAH A:301 , TRP B:58 , HOH B:312
BINDING SITE FOR RESIDUE SPF A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: SAM_OMT_I (A:22-246,B:22-246,C:22-246,D:22-24...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SAM_OMT_I
PS51682
SAM-dependent O-methyltransferase class I-type profile.
CAMT_MEDSA
22-246
4
A:22-246
B:22-246
C:22-246
D:22-246
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d1susa_ (A:)
1b: SCOP_d1susb_ (B:)
1c: SCOP_d1susc_ (C:)
1d: SCOP_d1susd_ (D:)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Superfamily
:
S-adenosyl-L-methionine-dependent methyltransferases
(533)
Family
:
COMT-like
(31)
Protein domain
:
Caffeoyl-CoA O-methyltransferase
(2)
Alfalfa (Medicago sativa) [TaxId: 3879]
(2)
1a
d1susa_
A:
1b
d1susb_
B:
1c
d1susc_
C:
1d
d1susd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1susA00 (A:21-247)
1b: CATH_1susB00 (B:21-247)
1c: CATH_1susC00 (C:21-247)
1d: CATH_1susD00 (D:21-247)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Vaccinia Virus protein VP39
(378)
Medicago sativa. Organism_taxid: 3879.
(2)
1a
1susA00
A:21-247
1b
1susB00
B:21-247
1c
1susC00
C:21-247
1d
1susD00
D:21-247
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Methyltransf_3_1susD01 (D:34-246)
1b: PFAM_Methyltransf_3_1susD02 (D:34-246)
1c: PFAM_Methyltransf_3_1susD03 (D:34-246)
1d: PFAM_Methyltransf_3_1susD04 (D:34-246)
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Clan
:
NADP_Rossmann
(1239)
Family
:
Methyltransf_3
(13)
Medicago sativa (Alfalfa)
(2)
1a
Methyltransf_3-1susD01
D:34-246
1b
Methyltransf_3-1susD02
D:34-246
1c
Methyltransf_3-1susD03
D:34-246
1d
Methyltransf_3-1susD04
D:34-246
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (159 KB)
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