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1SUM
Biol. Unit 1
Info
Asym.Unit (46 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (77 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN AT 2.0 A RESOLUTION
Authors
:
J. Liu, Y. Lou, H. Yokota, P. D. Adams, R. Kim, S. H. Kim, Berkeley Struct Genomics Center (Bsgc)
Date
:
26 Mar 04 (Deposition) - 24 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : B
Biol. Unit 1: B (1x)
Biol. Unit 2: B (2x)
Keywords
:
Phou, Abc Transport, Pst, Structural Genomics, Berkeley Structural Genomics Center, Bsgc, Structure Funded By Nih, Protein Structure Initiative, Psi, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. Liu, Y. Lou, H. Yokota, P. D. Adams, R. Kim, S. H. Kim
Crystal Structure Of A Phou Protein Homologue: A New Class Of Metalloprotein Containing Multinuclear Iron Clusters.
J. Biol. Chem. V. 280 15960 2005
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
2g: FE (III) ION (FEg)
3a: NICKEL (II) ION (NIa)
4a: PHOSPHITE ION (PO3a)
4b: PHOSPHITE ION (PO3b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
FE
-1
Ligand/Ion
FE (III) ION
3
NI
-1
Ligand/Ion
NICKEL (II) ION
4
PO3
2
Ligand/Ion
PHOSPHITE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:7 , GLU B:11 , GLU B:106 , GLU B:109
BINDING SITE FOR RESIDUE FE B 236
02
AC2
SOFTWARE
GLU B:49 , ASP B:53 , GLU B:91 , ASP B:95 , PO3 B:569 , HOH B:615
BINDING SITE FOR RESIDUE FE B 237
03
AC3
SOFTWARE
GLU B:91 , ASN B:92 , ASP B:95 , PO3 B:569 , HOH B:589 , HOH B:628
BINDING SITE FOR RESIDUE FE B 238
04
AC4
SOFTWARE
GLU B:56 , GLU B:88 , GLU B:91 , HOH B:579 , HOH B:589
BINDING SITE FOR RESIDUE FE B 239
05
AC5
SOFTWARE
ASP B:152 , ASP B:156 , GLU B:191 , ASP B:195 , PO3 B:568 , HOH B:603
BINDING SITE FOR RESIDUE FE B 240
06
AC6
SOFTWARE
GLU B:191 , ASP B:195 , PO3 B:568 , HOH B:624 , HOH B:627 , HOH B:634
BINDING SITE FOR RESIDUE FE B 241
07
AC7
SOFTWARE
ASP B:152 , ASP B:156 , PO3 B:568 , HOH B:573 , HOH B:590
BINDING SITE FOR RESIDUE FE B 242
08
AC8
SOFTWARE
GLU B:49 , GLU B:50 , ASP B:53 , LYS B:214 , PO3 B:569 , HOH B:592 , HOH B:611
BINDING SITE FOR RESIDUE NI B 301
09
AC9
SOFTWARE
ARG B:163
BINDING SITE FOR RESIDUE CA B 401
10
BC1
SOFTWARE
ASP B:152 , ASP B:156 , GLU B:191 , ASP B:195 , FE B:240 , FE B:241 , FE B:242 , HOH B:627 , HOH B:634
BINDING SITE FOR RESIDUE PO3 B 568
11
BC2
SOFTWARE
GLU B:49 , ASP B:53 , GLU B:91 , ASP B:95 , ASN B:199 , FE B:237 , FE B:238 , NI B:301
BINDING SITE FOR RESIDUE PO3 B 569
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1sumb_ (B:)
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Classes
(
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(
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Folds
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Spectrin repeat-like
(186)
Superfamily
:
PhoU-like
(9)
Family
:
PhoU-like
(8)
Protein domain
:
PhoU homolog TM1734
(1)
Thermotoga maritima [TaxId: 2336]
(1)
1a
d1sumb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1sumB01 (B:2-108)
1b: CATH_1sumB02 (B:109-226)
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Classes
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Topologies
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(192)
Homologous Superfamily
:
Phosphate transport system protein phou homolog 2; domain 2
(4)
Thermotoga maritima. Organism_taxid: 2336.
(1)
1a
1sumB01
B:2-108
1b
1sumB02
B:109-226
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PhoU_1sumB01 (B:119-204)
1b: PFAM_PhoU_1sumB02 (B:119-204)
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Clans
(
)
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(
)
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)
(
)
Clan
:
PhoU
(6)
Family
:
PhoU
(4)
Thermotoga maritima
(1)
1a
PhoU-1sumB01
B:119-204
1b
PhoU-1sumB02
B:119-204
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Chain B
Asymmetric Unit 1
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Asym.Unit (46 KB)
Header - Asym.Unit
Biol.Unit 1 (40 KB)
Header - Biol.Unit 1
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