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1SU5
Asym. Unit
Info
Asym.Unit (86 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
UNDERSTANDING PROTEIN LIDS: STRUCTURAL ANALYSIS OF ACTIVE HINGE MUTANTS IN TRIOSEPHOSPHATE ISOMERASE
Authors
:
I. Kursula, M. Salin, J. Sun, B. V. Norledge, A. M. Haapalainen, N. S. Sam R. K. Wierenga
Date
:
26 Mar 04 (Deposition) - 24 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Archae, Evolution, Flexible Loop-6, Tim, N-Hinge, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Kursula, M. Salin, J. Sun, B. V. Norledge, A. M. Haapalainen, N. S. Sampson, R. K. Wierenga
Understanding Protein Lids: Structural Analysis Of Active Hinge Mutants In Triosephosphate Isomerase
Protein Eng. Des. Sel. V. 17 375 2004
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: 2-PHOSPHOGLYCOLIC ACID (PGAa)
2b: 2-PHOSPHOGLYCOLIC ACID (PGAb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
PGA
2
Ligand/Ion
2-PHOSPHOGLYCOLIC ACID
3
SO4
9
Ligand/Ion
SULFATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:13 , HIS A:95 , GLU A:165 , ILE A:170 , GLY A:171 , GLY A:210 , SER A:211 , LEU A:230 , GLY A:232 , GLY A:233 , HOH A:319 , HOH A:330 , HOH A:360 , HOH A:396
BINDING SITE FOR RESIDUE PGA A 300
02
AC2
SOFTWARE
LYS B:13 , HIS B:95 , GLU B:165 , ALA B:169 , ILE B:170 , GLY B:171 , GLY B:210 , SER B:211 , LEU B:230 , GLY B:232 , GLY B:233 , HOH B:1309 , HOH B:1317 , HOH B:1332
BINDING SITE FOR RESIDUE PGA B 1300
03
AC3
SOFTWARE
ASP A:56 , ALA A:57 , HOH A:364 , LYS B:5
BINDING SITE FOR RESIDUE SO4 A 301
04
AC4
SOFTWARE
SER B:197 , ASP B:198
BINDING SITE FOR RESIDUE SO4 B 1301
05
AC5
SOFTWARE
SER B:96 , HIS B:100 , VAL B:101 , VAL B:167
BINDING SITE FOR RESIDUE SO4 B 1302
06
AC6
SOFTWARE
SER A:197 , ASP A:198
BINDING SITE FOR RESIDUE SO4 A 302
07
AC7
SOFTWARE
ALA B:114 , HIS B:115 , ALA B:118 , HOH B:1324
BINDING SITE FOR RESIDUE SO4 B 1303
08
AC8
SOFTWARE
LYS A:58 , LEU B:33 , SER B:34 , ALA B:35 , THR B:37 , LYS B:58 , HOH B:1361
BINDING SITE FOR RESIDUE SO4 B 1304
09
AC9
SOFTWARE
LYS A:5 , ASP B:56 , ALA B:57 , HOH B:1312
BINDING SITE FOR RESIDUE SO4 B 1305
10
BC1
SOFTWARE
ASP A:132 , GLU A:133 , ALA A:136
BINDING SITE FOR RESIDUE SO4 A 303
11
BC2
SOFTWARE
LYS A:68 , ALA A:114 , HIS A:115 , ALA A:118 , HOH A:379
BINDING SITE FOR RESIDUE SO4 A 304
12
BC3
SOFTWARE
LYS B:32 , LYS B:148
BINDING SITE FOR RESIDUE GOL B 1
13
BC4
SOFTWARE
ASP A:49 , GLN A:53 , LYS B:18 , ASP B:49 , GLN B:53
BINDING SITE FOR RESIDUE GOL B 1306
14
BC5
SOFTWARE
LYS A:68 , GLN A:111
BINDING SITE FOR RESIDUE GOL A 305
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: TIM_2 (A:5-246,B:5-246)
2: TIM_1 (A:163-173,B:163-173)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TIM_2
PS51440
Triosephosphate isomerase (TIM) family profile.
TPIS_CHICK
5-246
2
A:5-246
B:5-246
2
TIM_1
PS00171
Triosephosphate isomerase active site.
TPIS_CHICK
163-173
2
A:163-173
B:163-173
[
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Exons
(7, 14)
Info
All Exons
Exon 1.1 (A:2-38 | B:2-38)
Exon 1.2 (A:38-79 | B:38-79)
Exon 1.3 (A:79-107 | B:79-107)
Exon 1.4 (A:108-152 | B:108-152)
Exon 1.5 (A:152-180 | B:152-180)
Exon 1.6 (A:181-210 | B:181-210)
Exon 1.7 (A:210-248 | B:210-248)
View:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7
8: Boundary 1.7/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSGALT00000023442
1
ENSGALE00000242044
chr1:
80431223-80431451
229
TPIS_CHICK
1-38
38
2
A:2-38
B:2-38
37
37
1.2
ENSGALT00000023442
2
ENSGALE00000153292
chr1:
80432287-80432410
124
TPIS_CHICK
38-79
42
2
A:38-79
B:38-79
42
42
1.3
ENSGALT00000023442
3
ENSGALE00000153290
chr1:
80432505-80432589
85
TPIS_CHICK
79-107
29
2
A:79-107
B:79-107
29
29
1.4
ENSGALT00000023442
4
ENSGALE00000153291
chr1:
80432725-80432857
133
TPIS_CHICK
108-152
45
2
A:108-152
B:108-152
45
45
1.5
ENSGALT00000023442
5
ENSGALE00000153294
chr1:
80433088-80433173
86
TPIS_CHICK
152-180
29
2
A:152-180
B:152-180
29
29
1.6
ENSGALT00000023442
6
ENSGALE00000153293
chr1:
80433324-80433411
88
TPIS_CHICK
181-210
30
2
A:181-210
B:181-210
30
30
1.7
ENSGALT00000023442
7
ENSGALE00000153295
chr1:
80433666-80434223
558
TPIS_CHICK
210-248
39
2
A:210-248
B:210-248
39
39
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1su5a_ (A:)
1b: SCOP_d1su5b_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Triosephosphate isomerase (TIM)
(148)
Family
:
Triosephosphate isomerase (TIM)
(128)
Protein domain
:
Triosephosphate isomerase
(126)
Chicken (Gallus gallus) [TaxId: 9031]
(16)
1a
d1su5a_
A:
1b
d1su5b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1su5A00 (A:2-248)
1b: CATH_1su5B00 (B:2-248)
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Homologous Superfamilies
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Chicken (Gallus gallus)
(18)
1a
1su5A00
A:2-248
1b
1su5B00
B:2-248
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TIM_1su5B01 (B:6-244)
1b: PFAM_TIM_1su5B02 (B:6-244)
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Clans
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Families
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(
)
Organisms
(
)
(
)
Clan
:
TIM_barrel
(694)
Family
:
TIM
(80)
Gallus gallus (Chicken)
(12)
1a
TIM-1su5B01
B:6-244
1b
TIM-1su5B02
B:6-244
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Asymmetric Unit 1
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