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Asym. Unit
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Asym.Unit (35 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF KD93, A NOVEL PROTEIN EXPRESSED IN THE HUMAN PRO
Authors
:
J. F. Liu, X. Q. Wang, Z. X. Wang, J. R. Chen, T. Jiang, X. M. An, W. R. Chan, D. C. Liang
Date
:
19 Mar 04 (Deposition) - 22 Mar 05 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pua, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Liu, X. Q. Wang, Z. X. Wang, J. R. Chen, T. Jiang, X. M. An, W. R. Chang, D. C. Liang
Crystal Structure Of Kd93, A Novel Protein Expressed In Human Hematopoietic Stem/Progenitor Cells.
J. Struct. Biol. V. 148 370 2004
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036488 (E171Q, chain A, )
2: VAR_NIP7_HUMAN_CCDS10877_1_01 (E171Q, chain A, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036488
E
171
Q
NIP7_HUMAN
Unclassified
---
A
E
171
Q
2
CancerSNP
VAR_NIP7_HUMAN_CCDS10877_1_01
*
E
171
Q
NIP7_HUMAN
Disease (Breast cancer)
---
A
E
171
Q
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PUA (A:94-170)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PUA
PS50890
PUA domain profile.
NIP7_HUMAN
94-170
1
A:94-170
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Exons
(5, 5)
Info
All Exons
Exon 1.1a (A:1-19)
Exon 1.2 (A:19-48)
Exon 1.3 (A:48-94)
Exon 1.4 (A:95-141)
Exon 1.5b (A:142-176)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary 1.4/1.5b
6: Boundary 1.5b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000254940
1a
ENSE00001912636
chr16:
69373343-69373788
446
NIP7_HUMAN
1-19
19
1
A:1-19
19
1.2
ENST00000254940
2
ENSE00000904600
chr16:
69373909-69373995
87
NIP7_HUMAN
19-48
30
1
A:19-48
30
1.3
ENST00000254940
3
ENSE00000904602
chr16:
69374097-69374235
139
NIP7_HUMAN
48-94
47
1
A:48-94
47
1.4
ENST00000254940
4
ENSE00000904606
chr16:
69375083-69375223
141
NIP7_HUMAN
95-141
47
1
A:95-141
47
1.5b
ENST00000254940
5b
ENSE00001872045
chr16:
69375436-69377014
1579
NIP7_HUMAN
142-180
39
1
A:142-176
35
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1sqwa1 (A:95-176)
2a: SCOP_d1sqwa2 (A:1-94)
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Classes
(
)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
PUA domain-like
(96)
Superfamily
:
PUA domain-like
(96)
Family
:
PUA domain
(22)
Protein domain
:
Nip7p homolog, C-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1sqwa1
A:95-176
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cystatin-like
(403)
Superfamily
:
Pre-PUA domain
(11)
Family
:
Nip7p homolog, N-terminal domain
(2)
Protein domain
:
Nip7p homolog, N-terminal domain
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d1sqwa2
A:1-94
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_UPF0113_1sqwA01 (A:1-175)
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Clans
(
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Organisms
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)
(
)
Clan
:
PUA
(42)
Family
:
UPF0113
(2)
Homo sapiens (Human)
(1)
1a
UPF0113-1sqwA01
A:1-175
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Asymmetric Unit 1
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