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1SQL
Biol. Unit 1
Info
Asym.Unit (335 KB)
Biol.Unit 1 (166 KB)
Biol.Unit 2 (167 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF 7,8-DIHYDRONEOPTERIN ALDOLASE IN COMPLEX WITH GUANINE
Authors
:
S. Bauer, A. K. Schott, V. Illarionova, A. Bacher, R. Huber, M. Fischer
Date
:
19 Mar 04 (Deposition) - 08 Jun 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Biol. Unit 2: I,J,K,L,M,N,O,P (1x)
Keywords
:
Tetrahydrofolate Biosynthesis, Aldolase Classes, Retroaldol Reaction, Purin Binding, Schiff Base, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bauer, A. K. Schott, V. Illarionova, A. Bacher, R. Huber, M. Fischer
Biosynthesis Of Tetrahydrofolate In Plants: Crystal Structure Of 7, 8-Dihydroneopterin Aldolase From Arabidopsis Thaliana Reveals A Novel Adolase Class.
J. Mol. Biol. V. 339 967 2004
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 8)
Info
All Hetero Components
1a: GUANINE (GUNa)
1b: GUANINE (GUNb)
1c: GUANINE (GUNc)
1d: GUANINE (GUNd)
1e: GUANINE (GUNe)
1f: GUANINE (GUNf)
1g: GUANINE (GUNg)
1h: GUANINE (GUNh)
1i: GUANINE (GUNi)
1j: GUANINE (GUNj)
1k: GUANINE (GUNk)
1l: GUANINE (GUNl)
1m: GUANINE (GUNm)
1n: GUANINE (GUNn)
1o: GUANINE (GUNo)
1p: GUANINE (GUNp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GUN
8
Ligand/Ion
GUANINE
[
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]
Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:51 , SER A:52 , TYR A:53 , HOH A:1010 , LEU D:71 , LEU D:72 , GLU D:73
BINDING SITE FOR RESIDUE GUN A 1001
2
AC2
SOFTWARE
LEU A:71 , LEU A:72 , GLU A:73 , LEU B:4 , THR B:50 , ILE B:51 , SER B:52 , TYR B:53 , HOH B:1010
BINDING SITE FOR RESIDUE GUN B 1002
3
AC3
SOFTWARE
LEU B:71 , LEU B:72 , GLU B:73 , HOH B:1066 , ILE C:51 , SER C:52 , TYR C:53
BINDING SITE FOR RESIDUE GUN B 1003
4
AC4
SOFTWARE
LEU C:71 , LEU C:72 , GLU C:73 , HOH C:128 , ILE D:51 , SER D:52 , TYR D:53
BINDING SITE FOR RESIDUE GUN D 1004
5
AC5
SOFTWARE
LEU E:4 , THR E:50 , ILE E:51 , SER E:52 , TYR E:53 , LEU H:71 , LEU H:72 , GLU H:73 , HOH H:1029 , HOH H:1070
BINDING SITE FOR RESIDUE GUN H 1005
6
AC6
SOFTWARE
LEU E:71 , LEU E:72 , GLU E:73 , LEU F:47 , THR F:50 , ILE F:51 , SER F:52 , TYR F:53 , HOH F:1022
BINDING SITE FOR RESIDUE GUN F 1006
7
AC7
SOFTWARE
LEU F:71 , LEU F:72 , GLU F:73 , LEU G:4 , THR G:50 , ILE G:51 , SER G:52 , TYR G:53 , HOH G:1035
BINDING SITE FOR RESIDUE GUN G 1007
8
AC8
SOFTWARE
LEU G:71 , LEU G:72 , GLU G:73 , HOH G:1021 , HOH G:1073 , LEU H:4 , LEU H:47 , THR H:50 , ILE H:51 , SER H:52 , TYR H:53
BINDING SITE FOR RESIDUE GUN G 1008
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 16)
Info
All SCOP Domains
1a: SCOP_d1sqla_ (A:)
1b: SCOP_d1sqlb_ (B:)
1c: SCOP_d1sqlk_ (K:)
1d: SCOP_d1sqll_ (L:)
1e: SCOP_d1sqlm_ (M:)
1f: SCOP_d1sqln_ (N:)
1g: SCOP_d1sqlo_ (O:)
1h: SCOP_d1sqlp_ (P:)
1i: SCOP_d1sqlc_ (C:)
1j: SCOP_d1sqld_ (D:)
1k: SCOP_d1sqle_ (E:)
1l: SCOP_d1sqlf_ (F:)
1m: SCOP_d1sqlg_ (G:)
1n: SCOP_d1sqlh_ (H:)
1o: SCOP_d1sqli_ (I:)
1p: SCOP_d1sqlj_ (J:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
DHN aldolase/epimerase
(16)
Protein domain
:
7,8-dihydroneopterin aldolase
(15)
Thale cress (Arabidopsis thaliana) [TaxId: 3702]
(1)
1a
d1sqla_
A:
1b
d1sqlb_
B:
1c
d1sqlk_
K:
1d
d1sqll_
L:
1e
d1sqlm_
M:
1f
d1sqln_
N:
1g
d1sqlo_
O:
1h
d1sqlp_
P:
1i
d1sqlc_
C:
1j
d1sqld_
D:
1k
d1sqle_
E:
1l
d1sqlf_
F:
1m
d1sqlg_
G:
1n
d1sqlh_
H:
1o
d1sqli_
I:
1p
d1sqlj_
J:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_1sqlJ00 (J:1-123)
1b: CATH_1sqlM00 (M:1-123)
1c: CATH_1sqlN00 (N:1-121)
1d: CATH_1sqlA00 (A:1-120)
1e: CATH_1sqlD00 (D:1-120)
1f: CATH_1sqlE00 (E:1-120)
1g: CATH_1sqlK00 (K:1-120)
1h: CATH_1sqlO00 (O:1-120)
1i: CATH_1sqlC00 (C:1-122)
1j: CATH_1sqlH00 (H:1-122)
1k: CATH_1sqlL00 (L:1-122)
1l: CATH_1sqlP00 (P:0-121)
1m: CATH_1sqlB00 (B:1-121)
1n: CATH_1sqlF00 (F:1-121)
1o: CATH_1sqlG00 (G:1-121)
1p: CATH_1sqlI00 (I:1-121)
View:
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(
)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
GTP Cyclohydrolase I, domain 2
(31)
Homologous Superfamily
:
[code=3.30.1130.10, no name defined]
(31)
Thale cress (Arabidopsis thaliana)
(1)
1a
1sqlJ00
J:1-123
1b
1sqlM00
M:1-123
1c
1sqlN00
N:1-121
1d
1sqlA00
A:1-120
1e
1sqlD00
D:1-120
1f
1sqlE00
E:1-120
1g
1sqlK00
K:1-120
1h
1sqlO00
O:1-120
1i
1sqlC00
C:1-122
1j
1sqlH00
H:1-122
1k
1sqlL00
L:1-122
1l
1sqlP00
P:0-121
1m
1sqlB00
B:1-121
1n
1sqlF00
F:1-121
1o
1sqlG00
G:1-121
1p
1sqlI00
I:1-121
[
close CATH info
]
Pfam Domains
(1, 16)
Info
all PFAM domains
1a: PFAM_FolB_1sqlP01 (P:4-118)
1b: PFAM_FolB_1sqlP02 (P:4-118)
1c: PFAM_FolB_1sqlP03 (P:4-118)
1d: PFAM_FolB_1sqlP04 (P:4-118)
1e: PFAM_FolB_1sqlP05 (P:4-118)
1f: PFAM_FolB_1sqlP06 (P:4-118)
1g: PFAM_FolB_1sqlP07 (P:4-118)
1h: PFAM_FolB_1sqlP08 (P:4-118)
1i: PFAM_FolB_1sqlP09 (P:4-118)
1j: PFAM_FolB_1sqlP10 (P:4-118)
1k: PFAM_FolB_1sqlP11 (P:4-118)
1l: PFAM_FolB_1sqlP12 (P:4-118)
1m: PFAM_FolB_1sqlP13 (P:4-118)
1n: PFAM_FolB_1sqlP14 (P:4-118)
1o: PFAM_FolB_1sqlP15 (P:4-118)
1p: PFAM_FolB_1sqlP16 (P:4-118)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
THBO-biosyn
(64)
Family
:
FolB
(15)
Arabidopsis thaliana (Mouse-ear cress)
(1)
1a
FolB-1sqlP01
P:4-118
1b
FolB-1sqlP02
P:4-118
1c
FolB-1sqlP03
P:4-118
1d
FolB-1sqlP04
P:4-118
1e
FolB-1sqlP05
P:4-118
1f
FolB-1sqlP06
P:4-118
1g
FolB-1sqlP07
P:4-118
1h
FolB-1sqlP08
P:4-118
1i
FolB-1sqlP09
P:4-118
1j
FolB-1sqlP10
P:4-118
1k
FolB-1sqlP11
P:4-118
1l
FolB-1sqlP12
P:4-118
1m
FolB-1sqlP13
P:4-118
1n
FolB-1sqlP14
P:4-118
1o
FolB-1sqlP15
P:4-118
1p
FolB-1sqlP16
P:4-118
[
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